Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01940 ATGTTATTGGTAGTGAAGATTTCAATGATCTTCCAAGTCATTATGAAGATGTTATTAGTAGAAGACATTATGAAGATCTTCCAAGTCTTGAAGATTTTTCCAATGATCTTAATTTCACACGAAAGgcaacctcgtggttttggttttgtccaatttgtcgatcctgctgatgctgccgatgctaaatatcatatggatggttcagttcttcttggaagggagctcactgttgtgtttgctgaggaaaacagaaagaagccAACTGAGATGAGGACCAGAGAAAGAAGTGGTCGATCTTCTGACCGACGGAGGTCCCCCCAGCGTTATTCTCGTTCACCCCGCTATTCCCGATCACCACCACGTCACAGATCTCGATATGATTCTCCTCCTCCTAAACGAAGGGAATATTCAAGATCTGTATCACCTGAGGATAGAAGGCGCAGTAGAGAAAGATCGTATTCCCAGCACAGCAGAGAGAGGTCATACTCACACTCTCCACCCAATAATGGAAATGCGAGAAGCCGTAGTCCGAGTCCAGTGAAAGACCCAGGTCAGAGTAGAAGTCAAAGTCCAGTTCGCGATGTCAGGGGATCAATTCACAGTAGGTCTCCCAGTCAGTGA 621 0.3527 MLLVVKISMIFQVIMKMLLVEDIMKIFQVLKIFPMILISHERQPRGFGFVQFVDPADAADAKYHMDGSVLLGRELTVVFAEENRKKPTEMRTRERSGRSSDRRRSPQRYSRSPRYSRSPPRHRSRYDSPPPKRREYSRSVSPEDRRRSRERSYSQHSRERSYSHSPPNNGNARSRSPSPVKDPGQSRSQSPVRDVRGSIHSRSPSQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01940 206 MobiDBLite consensus disorder prediction 120 158 - -
Car05g01940 206 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 30 190 - -
Car05g01940 206 SMART rrm1_1 12 78 IPR000504 GO:0003723
Car05g01940 206 MobiDBLite consensus disorder prediction 82 108 - -
Car05g01940 206 MobiDBLite consensus disorder prediction 82 206 - -
Car05g01940 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 82 IPR000504 GO:0003723
Car05g01940 206 SUPERFAMILY RNA-binding domain, RBD 40 109 IPR035979 GO:0003676
Car05g01940 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 75 IPR000504 GO:0003723
Car05g01940 206 Gene3D - 18 117 IPR012677 -
Car05g01940 206 MobiDBLite consensus disorder prediction 159 206 - -
Car05g01940 206 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 30 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01940 Car-Chr5 64695329 64698030 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01940 K12900 - gmx:100775883 168.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01940 05 64695329 64698030 Car05g01940 05 64695329 64698030 ECH