Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01767 ATGTTGAGACAATTATCACTGATTAAACAAGCTCAACCAACCTGGAACACTTACCTTCTCTACCAACTAAAACCCCCATTTTATCTTCCAAGAAACACCCTCACCACCGTAATCCAATCTCCATCATCCTCCGAAGACGCCACCATAGCAAAACTCGTCCTCGAATCAGATCCAACTTCCCTCTCCGAAACCCTAACAAACCTCAATTTCCAATGGACCCCACATCTAGTCAACAACGTTCTCAAGCGCCTTTGGAACCACGGACCCAAAGCCCTCCAATTCTTCAAACACCTCGAACGCCACCCAACTTACATTCACTCCACTTCCGCCTTCGAACACGCAATCGACATCTCGGCCCGATTGCGTGACTACAACACCGCATGGGCCTTAGTGGACCGTATGCGGACCCTCCGTCTCGGCCCAACTCCACGAACCTTCGCAATCCTCTCTGAAAGATACGCAACCGGCGGAAAAGCCCACCGGGCCGTGAAAGTGTTTCTGTCTATGCATGAACACGGTTGTAACCAGGATTTGAATTCATTCAACACGATCCTCGATGTTCTTTGTAAAACAAAACGCGTTGAGATGGCGCATAATTTGTTCAAAACATTCAAAGGTAGGTTCAAATGTGATAGTGTTAGTTATAATATAATGGCGAATGGTTGGTGTTTGATGAAGCGAACGCCGATGGCGTTGCAGGTTATGAAGGAGATGGTGGAGAGGGGAATTACGCCGACGATGGTTACTTATAATACATTGCTTAAAGGGTATTTTAGGTCTCATCAATTGAATGAAGCTTGGGATTTTTTTTTGGAGATGAAGAAGAGGAAGTGTGAAATTGATGTTGTTACTTATACTACAATGGTTCATGGGTTTGGTGTTGCTGGTGAGGTTAAGAGATCGAAGAGGGTTTTCGATGCGATGGTTAAAGAGGGTTTGATTCCTTCAGTTGCTACTTATAATGCTTTGATTCAGGTTTTGTGTAAGAAGGATAATGTGCAGAATGCTTTGTTGGTTTTTGAGGAGATGGTGGGGAAAGGTTATGTTCCTAATTTGACTACTTACAATGTTGTTATAAGAGGTTTGTGTCATTCGGGTGAAATGGAGAAAGCTTTGGAGTTTATGGAGAGAATGGAGGAACATGGATGTAGGCCAAGTGTTCAGACATACAATGTTGTGATTCGTTATTTTTGTGATGATGGGGAGCTTGAAAAGGGTTTTGGGTTGTTTGAAAAGATGGGGAATGGGACTTGTTTGCCTAATTTGGATACCTATAATATTTTGATTAGTGCTATGTTTGTGAGGAAGAAATCAGAGGACTTGGTGGTGGCTGGGAAATTGTTGATCGAGATGGTTGGTAGAGGGTTCTTACCGCGTAAGTTTACTTTTAATCGGGTGTTAAATGGACTTGTTCTTACCGGGAATCGAGATTTTGCTAATGAGATATTAAGAATGCAAAGCAGGTGTGGCCGCATTCTTCGCCATGTGAAATTATGA 1497 0.4315 MLRQLSLIKQAQPTWNTYLLYQLKPPFYLPRNTLTTVIQSPSSSEDATIAKLVLESDPTSLSETLTNLNFQWTPHLVNNVLKRLWNHGPKALQFFKHLERHPTYIHSTSAFEHAIDISARLRDYNTAWALVDRMRTLRLGPTPRTFAILSERYATGGKAHRAVKVFLSMHEHGCNQDLNSFNTILDVLCKTKRVEMAHNLFKTFKGRFKCDSVSYNIMANGWCLMKRTPMALQVMKEMVERGITPTMVTYNTLLKGYFRSHQLNEAWDFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGLIPSVATYNALIQVLCKKDNVQNALLVFEEMVGKGYVPNLTTYNVVIRGLCHSGEMEKALEFMERMEEHGCRPSVQTYNVVIRYFCDDGELEKGFGLFEKMGNGTCLPNLDTYNILISAMFVRKKSEDLVVAGKLLIEMVGRGFLPRKFTFNRVLNGLVLTGNRDFANEILRMQSRCGRILRHVKL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01767 498 Pfam PPR repeat family 177 223 IPR002885 -
Car05g01767 498 Pfam PPR repeat family 245 292 IPR002885 -
Car05g01767 498 Pfam PPR repeat family 315 364 IPR002885 -
Car05g01767 498 Pfam PPR repeat family 385 432 IPR002885 -
Car05g01767 498 Gene3D Tetratricopeptide repeat domain 205 307 IPR011990 GO:0005515
Car05g01767 498 Gene3D Tetratricopeptide repeat domain 59 204 IPR011990 GO:0005515
Car05g01767 498 Gene3D Tetratricopeptide repeat domain 379 496 IPR011990 GO:0005515
Car05g01767 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Car05g01767 498 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 22 498 - -
Car05g01767 498 Gene3D Tetratricopeptide repeat domain 308 378 IPR011990 GO:0005515
Car05g01767 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Car05g01767 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 319 351 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 389 421 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 180 203 IPR002885 -
Car05g01767 498 TIGRFAM PPR: pentatricopeptide repeat domain 283 316 IPR002885 -
Car05g01767 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Car05g01767 498 PANTHER OS02G0679200 PROTEIN 22 498 - -
Car05g01767 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Car05g01767 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01767 Car-Chr5 62789765 62791261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01767 144 479 Miscellaneous Gene Families AT4G11690 27.083 2.01e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01767 - - adu:107473026 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01767 05 62789765 62791261 Car05g01767 05 62789765 62791261 ECH