Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01751 ATGGGTTCTGAAGTCCATCCTTCAGGTGTAATTGATAATGATAAAACTGTTTTCTCTTCTCCAAAAATCACAGCTGTAGAAGGGAATAATGGAGAACAAGAAAATCATGAGCTACATCCACAAATTCCTGGATGGTTTGCAGAACATTGTCCAATATGGCCAGGGGAAGCACATTTCTTGAAGGTGGAAAATGTTTGTTTTCAAGGGAAGTCTGAATATCAAGATATGCTAGTTTTTCAGACATCAACATATGGTAAGGTATTTGTTCTGGATGGAGCACTCCAACTCACTGAGAAAGATGAATGTTCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATTCCAAACCCAAAAAAGGTGTTGCTTATTGGTGGAGGAGATGGTGGCATCCTTAGGGAAATTTCCCGACATTCTTCTGTTGAACACATTGACATATGTGAAATTGACACAATGCTCATTGATGTTTATAAGAAATATTTCCCAGATGTGGCTGTTGGCTACAAGGACCCCAGAGTAAAGATTAATGTTATAGATGGAACAATTTTTCTGAAGTCTGTCCCAAGAGGCACATATGATGCAATAATAGTGGATGCCTTCGACCCAATAAGGCCTGATCATGAGTTATTTGAAACTCAATTCTTTGAATCGGTTTCAAAAGCTCTACGTCCTGGAGGAGTTTTGTGCATCCAAGCAGAGAGTTTTTGGTTTAAGTCATTGGATATTCAACAACTTCTAATCAAATCCTCCCAAACTTTCAAAGGCTCCAATGATTATGCATGGACTATTGTCCCAACATATCCAAGTGGGGTGATTGGTTTCTTGCTTTGTTCAACCGAAGGGCCACATGTGGACTTCAGAAACCCAATTAACCCAATTGATCCAGAAAATTATGGCATATCAAAGAAACCCTTAAAGTTTTACAACTCAGAGATTCATTCATCTGCATTTCGCTTGCCATCTTTTGCCAAAAAGACCGAAGCTAAGAGCACTACAAAAGGGGTTTGA 1011 0.3917 MGSEVHPSGVIDNDKTVFSSPKITAVEGNNGEQENHELHPQIPGWFAEHCPIWPGEAHFLKVENVCFQGKSEYQDMLVFQTSTYGKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPNPKKVLLIGGGDGGILREISRHSSVEHIDICEIDTMLIDVYKKYFPDVAVGYKDPRVKINVIDGTIFLKSVPRGTYDAIIVDAFDPIRPDHELFETQFFESVSKALRPGGVLCIQAESFWFKSLDIQQLLIKSSQTFKGSNDYAWTIVPTYPSGVIGFLLCSTEGPHVDFRNPINPIDPENYGISKKPLKFYNSEIHSSAFRLPSFAKKTEAKSTTKGV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01751 336 Gene3D Spermidine synthase, tetramerisation domain 25 97 IPR037163 -
Car05g01751 336 TIGRFAM speE: spermidine synthase 45 323 IPR001045 GO:0003824
Car05g01751 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 43 280 IPR030374 -
Car05g01751 336 Hamap Polyamine aminopropyltransferase [speE]. 44 329 IPR001045 GO:0003824
Car05g01751 336 PANTHER SPERMIDINE SYNTHASE 37 329 - -
Car05g01751 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 326 IPR029063 -
Car05g01751 336 PANTHER SPERMIDINE/SPERMINE SYNTHASE 37 329 IPR001045 GO:0003824
Car05g01751 336 Pfam Spermine/spermidine synthase domain 101 288 - -
Car05g01751 336 Gene3D Vaccinia Virus protein VP39 98 331 IPR029063 -
Car05g01751 336 CDD AdoMet_MTases 143 232 - -
Car05g01751 336 Pfam Spermidine synthase tetramerisation domain 44 98 IPR035246 -
Car05g01751 336 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 122 135 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01751 Car-Chr5 62623454 62628456 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01751 K00797 - gmx:100785862 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01751 05 62623454 62628456 Car05g01751 05 62623454 62628456 ECH