Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01705 ATGTTGACTCAGTTTCAATGGCTCCATTCTGAACTCAGCAACGTTTGCAAGTCCCTGTTGAGGGCGAAGCAGTTACATGTTTGGCTTTTGAAGACCCATCTCTCACAAGACCCTTTTTATGCAACTCAAATCATTAGACTCTATGCAATTAACAATGACATTAGTTCTGCACATCACGTGTTTGACAAAACTCCCACTCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTTTGCCAAGACTCGAAGATTTGGCAATGCAATCTCTTTGTTTAGAACCATGCTTGAGAGTGATATAAGGCCTGATAATTACACTTATGCTTGTGTTATACGTGCATGTGCTGATAACTTTGATTTTGGTATGCTTAGACTTGTTCATGGAAGTGCTGTGTCTGCAGGGTTGGGACTTGATCCTATTTGTTGCAGTGCACTTGTGAGTGCTTATTCAAAACTCGGCCTTGTTCACGAAGCGTGTAGAGTGTTCGATGGAATTGCTGAACCAGATTCAGTTTTGTGGAACTCGTTGATTTCTGCTTATGTGTGTTCTGATTCTAGCTTGCTGAGTATTGGCCAAGGGTTACATGGTTTGAGTCAAAAGAGTGGACTTGATTTTGATTCTCATGTAGGTAGTTTACTAGTGAGTATGTACTCAAGATGTAAGTGCATGGATTCAGCTTATAGAGTCTTTTGCAGTATTTTCAATCCAGATTTAGTTACATGGTCTGCTCTAATAGCTGGGTATTCTCAGTGTGGGGAGTATCACAAAGCGTTGATAATTTTCTGGAAATTAAACATGGAGGGCAAGAAACCAGATTCTGTTTTGATTGCCAGTGTGTTGGCTTCTATAGCTCAGACAGCAAATGTAGGACCAGGATGTGAGATACATGGTTATGTTCTTCGGCATGGATTGGAGTCAGATGTCAAGGTCTCTTCTGCTCTCATAGACATGTATTCAAAGTGTGGTTTCCTGCACTTGGCAACTTGTGTGTTCAGGATAATGCCGGAGCGGAATATAATTTCTTATAATTCAGTAATTTTGGCTCTTGGCTTGCACGGATGCGCTTCCAAGGCTTTTGTAATTTTTGATGAGATACTTGAGGAAGGCTTGGTACCTGATGAAGCAACATTCTCTGCTCTCCTTGGTGCTTGTTGTCACGCTGGGCTGGTCAAAGATGGCCGGGAGATTTTCCAGAGAATGAAAGATGAATTCAACATCAAAGCTAGACCGGAGCACTATGTTTACATGGTGAAGCTTCTTGGCACTGCTGGGGAATTAGAAGAGGCTTACAATCTCACTCAGTCCTTACCAGAACCAGTAGACAAGGCCATCTTGGGAGCCTTATTATCATGCTGTGATTCTTATGGGAATTCTGAGTTGGCAGAAACTATAGCTCATCAGATTTTTAAAACTAATCCTACTGACAATGTTTATAGGGTTATGCTTTCGAATATATATGCTGGCGACGGGAGATGGGATGATGTGAAGAAATTGAGGGATAAACTGACAGGGGGTCTGAAGAAAATGCCTGGAACCATAACTGCTGCCAGATATAAAGAGGCATCTCAGAAAGTGGCAAAACTCAGGTTGTACCCAAGTATTTTCTCATTGCATTTAGAAGTACTCTCTTTTTCACAGAACTTGAACACTGCCTCATTTTGGTGCAACCTTAAAGTGTATTTTGGGACACCGAAACCATTAAAGTTGAAATGGAGTGGGTTTTGTCCTTGTACCAGATATAGTGTTTATGTTCTAAATCTTGGAAGTGTCCCTCAGATCATAATGATAATCTGTGATTTCCCTGAAGATGCTGTCTATTTTAATTGA 1827 0.4111 MLTQFQWLHSELSNVCKSLLRAKQLHVWLLKTHLSQDPFYATQIIRLYAINNDISSAHHVFDKTPTRSVYLWNSMIRAFAKTRRFGNAISLFRTMLESDIRPDNYTYACVIRACADNFDFGMLRLVHGSAVSAGLGLDPICCSALVSAYSKLGLVHEACRVFDGIAEPDSVLWNSLISAYVCSDSSLLSIGQGLHGLSQKSGLDFDSHVGSLLVSMYSRCKCMDSAYRVFCSIFNPDLVTWSALIAGYSQCGEYHKALIIFWKLNMEGKKPDSVLIASVLASIAQTANVGPGCEIHGYVLRHGLESDVKVSSALIDMYSKCGFLHLATCVFRIMPERNIISYNSVILALGLHGCASKAFVIFDEILEEGLVPDEATFSALLGACCHAGLVKDGREIFQRMKDEFNIKARPEHYVYMVKLLGTAGELEEAYNLTQSLPEPVDKAILGALLSCCDSYGNSELAETIAHQIFKTNPTDNVYRVMLSNIYAGDGRWDDVKKLRDKLTGGLKKMPGTITAARYKEASQKVAKLRLYPSIFSLHLEVLSFSQNLNTASFWCNLKVYFGTPKPLKLKWSGFCPCTRYSVYVLNLGSVPQIIMIICDFPEDAVYFN 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01705 608 Pfam PPR repeat 141 163 IPR002885 -
Car05g01705 608 Pfam PPR repeat 239 264 IPR002885 -
Car05g01705 608 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Car05g01705 608 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Car05g01705 608 TIGRFAM PPR: pentatricopeptide repeat domain 376 403 IPR002885 -
Car05g01705 608 Pfam PPR repeat family 338 386 IPR002885 -
Car05g01705 608 Pfam PPR repeat family 68 115 IPR002885 -
Car05g01705 608 Gene3D Tetratricopeptide repeat domain 9 165 IPR011990 GO:0005515
Car05g01705 608 Gene3D Tetratricopeptide repeat domain 290 405 IPR011990 GO:0005515
Car05g01705 608 Gene3D Tetratricopeptide repeat domain 166 289 IPR011990 GO:0005515
Car05g01705 608 Pfam E motif 455 512 IPR046848 -
Car05g01705 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Car05g01705 608 SUPERFAMILY TPR-like 67 514 IPR011990 GO:0005515
Car05g01705 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Car05g01705 608 PANTHER OS01G0545900 PROTEIN 183 512 - -
Car05g01705 608 PANTHER OS01G0545900 PROTEIN 5 183 - -
Car05g01705 608 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 183 512 - -
Car05g01705 608 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 183 - -
Car05g01705 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 403 IPR002885 -
Car05g01705 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01705 Car-Chr5 61950206 61953062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01705 28 502 Glycoside Hydrolase AT3G49170 29.320 1.80e-68 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01705 - - gmx:100820049 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01705 05 61950206 61953062 Car05g01705 05 61950206 61953062 ECH