Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01680 ATGGGTGGATCAATTTCTAAACGGAGGAGCTCTAGGCAACGTTCTTCATCCTCAAGGTCACGTCCTTTGTATCCTCAATATCAATCACCTTATTTGCCACAACAAACCCAAGATCATGGAGCAATGCATGGGAATCAATTCCCACCTCAAAGCTATGGTGGTGTTAATCATGCTCCCCAACAAACAAAGGGTTCAGACAAGAAGTTTACAAGGATAGGTGATAATTTTAATAGCTTAGAACAGGTAACTGAGGCTCTGGCAGGTGCTGGCCTAGAGTCTTCTAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGTGCAAGGTCCTTTCAAAGGAAATGCCTGCATCACATCGGGCATGAACAAAATCCATATGAACAAGCTATAGCTATCATTGGCAAAACATTGTCTTCCTTTGATGAGGATAACTTGATTCCCTGTTTTGGATTCGGAGATGCGTCAACACATGACCAGGAAGTTTTTAGTTTCAATGCTGATGATAGATTTTGTCATGGATTTGAAGAAGTGTTGGCACGGTACAGGGAATTGGTCCCTCAATTAAGGCTTGCAGGACCCACATCATTTGCCCCAATCATTGAGATGGCAATCACCATTGTTGAGCAAAGTGAAGGCCAGTACCATGTTTTATTGATTATAGCAGATGGGCAGGTGACAAGAAGTGTTGACACTGAGCGTGGGCAATTGAGTACACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGCATATCCCCTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCATGGGACATGATGAAAGAGTTTGATGATAACATACCTGCCCGAGCATTTGATAATTTTCAGTTTGTGAATTTCGCAGAAATAATGTCAAAGAACATGGACTGGTCTAGAAAGGAAGCTGAGTTTGCACTTTCTGCCTTGATGGAAATACCTATCCAGTACAAGGCAACACTAGAACTTAATATATTGAGCGCTCGGAGAAAGAACGATATACACAGGATTCCTCTGCCGCCACCTCAATATGGCACATCTTCTTTCAACTCCCCAAAAACTTCCCGTCAAAACAGTTTTCGCCCCAGTGCACCATCTCACAAACATGGTGTTGACACGAACACACATGCAAGTTCTGCTTCTGATAATCAGTGTTGTCCTATTTGTCTCTCCAATCCTAAGGATATGGCTTTCGGTTGCGGTCATCAGACATGCTGCGAGTGCGGACAAGATCTTGAGTCATGCCCCATTTGCAGGAGTACCATTGATACTCGAATAAAACTTTATTAG 1305 0.4253 MGGSISKRRSSRQRSSSSRSRPLYPQYQSPYLPQQTQDHGAMHGNQFPPQSYGGVNHAPQQTKGSDKKFTRIGDNFNSLEQVTEALAGAGLESSNLIVGIDFTKSNEWTGARSFQRKCLHHIGHEQNPYEQAIAIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNADDRFCHGFEEVLARYRELVPQLRLAGPTSFAPIIEMAITIVEQSEGQYHVLLIIADGQVTRSVDTERGQLSTQEKKTVEAIVKASAYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFAEIMSKNMDWSRKEAEFALSALMEIPIQYKATLELNILSARRKNDIHRIPLPPPQYGTSSFNSPKTSRQNSFRPSAPSHKHGVDTNTHASSASDNQCCPICLSNPKDMAFGCGHQTCCECGQDLESCPICRSTIDTRIKLY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01680 434 Pfam Zinc finger, C3HC4 type (RING finger) 388 429 - -
Car05g01680 434 PANTHER COPINE FAMILY PROTEIN 1 1 434 - -
Car05g01680 434 SMART VWA_4 93 296 IPR002035 -
Car05g01680 434 Pfam Copine 118 332 IPR010734 -
Car05g01680 434 MobiDBLite consensus disorder prediction 1 70 - -
Car05g01680 434 CDD RING-HC_RGLG_plant 391 434 IPR045317 GO:0061630|GO:0070534
Car05g01680 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 434 IPR013083 -
Car05g01680 434 ProSiteProfiles Zinc finger RING-type profile. 391 424 IPR001841 -
Car05g01680 434 PANTHER RING-FINGER PROTEIN 1 434 - -
Car05g01680 434 MobiDBLite consensus disorder prediction 348 387 - -
Car05g01680 434 SUPERFAMILY RING/U-box 385 430 - -
Car05g01680 434 MobiDBLite consensus disorder prediction 341 387 - -
Car05g01680 434 SUPERFAMILY vWA-like 95 277 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01680 Car-Chr5 61616099 61620748 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01680 K16280 - gmx:100790800 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01680 05 61616099 61620748 Car05g01680 05 61616099 61620748 ECH