Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01670 ATGGCGAATTCTTGCAAGTCAAAGGAAGAAATTGCAAACGGAGCTATCAAACGCGCTTTGAAGGCTCTGCGGAAGCGGCATTTGAACGAAGAAGGAGCTCATGCTGCTGCTCTTTCTAGACCTATTGTTTCTCAGGACTCTGAATGGAAGGAGAAAGCAGAGAGTCTGGAACTGGAACTTCAGCAATGCTACAAAGCTCAGTCCCGAATATCCGAGCAACTCGTTGTAGAAATAGCTGAATCCAGAACTTTGAAAGCTTTGGTTCAAGAGAAAGAAACTGCTATCACTGATTTGCAGAAGGAATTGACTGAAGTGAGAGATGAGTGCTTGCAATTGAAAAAGGACTTGGAAGACAAAATTAAGGCTCTTGAACTCGTTCTGAGTGAGAATACAGAACTTAAAACACAATTGGAGCAAATGGCTATAAGAGCCAAGAATGCTGAAACTGAAAATAAGACATTGGTCGATCGCATGATGTTAGAAAAAATGAAGGACGCTGAACAATTAAATGAGGCAAACCAACTGTATGATGACATGATCAAGCAGCTAAAGGCCAGTGGTTTAGAAAAACTTGCAAGGCAGCATATAGACGGTATTGTTCGCCGAAGTGAAGAAGGTACTGATGTCTTTTTAGAGTCAAATATCCCTTCCACATGCAAATACAGGCTCCAAGCACATGAGGGTGGTTGTGCTTCCATATTGTTCCAGTACAATTCTAATAAATTGATTACTGGGGGACAGGATCGAACAGTTAAAGTGTGGGATGCAGATTCAGGATCCTTAATTTCCAAACTTTATGGATGTCTTGGCTCTGTATTAGATCTCACAATAACCAACGACAATAGATCCGTTATTGCTGCTAGCAGCTCAAACAACTTGTATGCGTGGGATCTCAACTCGGGTCGAGTTCATCATACCCTTACCGGTCACACAGATAAAGTCTGCACTGTCGATGTGAGCAAAGTTTCCAGCCGCCACGTTATCAGTGCAGCTTACGATCGCACTATAAAAGTTTGGGACTTGCATAAAGGTTATTGCATTAACACAATAATTTTCCACAGTAACTGCAATGCTCTTTGCTTCAGCATGGATGGACAGACCATATTTTCTGGACATGTTGATGGAAATCTTCGATTATGGGATATTAAAACTGGAAAACTACTTAGCGAGGTTGCAGCACACTCACTTGCCGTCACATCAATAACTCTTTCTCGGAATGGAAATGTTGTATTAACCAGTGGAAGAGACAATTTGCACAATTTGTTCGATGTGCGATCTCTAGAAGTTACTGCCACACTAAAAGCCACCGGAAATAGAGTGGCCTCTAATTGGAGTCGCTCGTGTATTAGTCCGGATGATAATAATGTTGCTGCTGGATCATCTGATGGATCTTTGTGTGTTTGGTCAGCATCTAAAGGTGATATACTCGGCACTTTGAAGGAACATACTTCTTCTATTCTTTCTTGTGCATGGAGTGGGCTTGGAAGACCCTTAGCTTCAGCTGACAAGAATGGAGTTGTTTGTATATGGGCCTAA 1536 0.4193 MANSCKSKEEIANGAIKRALKALRKRHLNEEGAHAAALSRPIVSQDSEWKEKAESLELELQQCYKAQSRISEQLVVEIAESRTLKALVQEKETAITDLQKELTEVRDECLQLKKDLEDKIKALELVLSENTELKTQLEQMAIRAKNAETENKTLVDRMMLEKMKDAEQLNEANQLYDDMIKQLKASGLEKLARQHIDGIVRRSEEGTDVFLESNIPSTCKYRLQAHEGGCASILFQYNSNKLITGGQDRTVKVWDADSGSLISKLYGCLGSVLDLTITNDNRSVIAASSSNNLYAWDLNSGRVHHTLTGHTDKVCTVDVSKVSSRHVISAAYDRTIKVWDLHKGYCINTIIFHSNCNALCFSMDGQTIFSGHVDGNLRLWDIKTGKLLSEVAAHSLAVTSITLSRNGNVVLTSGRDNLHNLFDVRSLEVTATLKATGNRVASNWSRSCISPDDNNVAAGSSDGSLCVWSASKGDILGTLKEHTSSILSCAWSGLGRPLASADKNGVVCIWA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Car05g01670 511 CDD WD40 219 511 - -
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 390 IPR001680 GO:0005515
Car05g01670 511 Gene3D - 78 354 IPR015943 GO:0005515
Car05g01670 511 SMART WD40_4 216 255 IPR001680 GO:0005515
Car05g01670 511 SMART WD40_4 258 297 IPR001680 GO:0005515
Car05g01670 511 SMART WD40_4 472 511 IPR001680 GO:0005515
Car05g01670 511 SMART WD40_4 426 469 IPR001680 GO:0005515
Car05g01670 511 SMART WD40_4 300 340 IPR001680 GO:0005515
Car05g01670 511 SMART WD40_4 384 423 IPR001680 GO:0005515
Car05g01670 511 SMART WD40_4 343 381 IPR001680 GO:0005515
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 260 - -
Car05g01670 511 ProSitePatterns Trp-Asp (WD) repeats signature. 242 256 IPR019775 -
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 478 IPR001680 GO:0005515
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 511 - -
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Car05g01670 511 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Car05g01670 511 Pfam Autophagy protein 16 (ATG16) 46 170 IPR013923 -
Car05g01670 511 Pfam WD domain, G-beta repeat 448 469 IPR001680 GO:0005515
Car05g01670 511 Pfam WD domain, G-beta repeat 345 381 IPR001680 GO:0005515
Car05g01670 511 Pfam WD domain, G-beta repeat 304 340 IPR001680 GO:0005515
Car05g01670 511 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Car05g01670 511 Pfam WD domain, G-beta repeat 474 510 IPR001680 GO:0005515
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 432 IPR001680 GO:0005515
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 511 IPR001680 GO:0005515
Car05g01670 511 Coils Coil 166 186 - -
Car05g01670 511 Gene3D - 355 511 IPR015943 GO:0005515
Car05g01670 511 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Car05g01670 511 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Car05g01670 511 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Car05g01670 511 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 9 510 - -
Car05g01670 511 Coils Coil 81 157 - -
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 341 - -
Car05g01670 511 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 510 IPR045160 GO:0000045
Car05g01670 511 SUPERFAMILY WD40 repeat-like 214 510 IPR036322 GO:0005515
Car05g01670 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 349 IPR001680 GO:0005515
Car05g01670 511 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01670 Car-Chr5 61545467 61550013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01670 298 510 Miscellaneous Gene Families AT5G08390 21.759 3.96e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01670 K17890 - gmx:100778336 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01670 05 61545467 61550013 Car05g01670 05 61545467 61550013 ECH