Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01599 ATGGACCGATTCAACAACGATGATCTCGAGTACGTTGTCGACGACTACTTCGACTCCTCCGATTTCGAAGACCAACAAACTTTCTCCGACAATGTTCCTCAACATATCTCCGATTCCGATTCTCACCACTCCGATTTTGAAGACAATTTCGATACGACTAATGCTACGACTGATACAACTGCTTCGGAAGCACGAAACGGGAAAGATATTCAAGGAATTCCATGGGACAGGCTTAATTATAGTAGACAGGAATACCGTGAGACTCGTTTGAAGCAGTATAATAACTACGAGAATCTCTCTCGCTCTCGTGAGGAGCTCGATAAGGAATGCTTGGAAGTGCAGAAAGGAAAGTCCTTCTATGATTTTCAATTCAATACCAGGCTTGTCAAATCAACAATTGTGCACTTTCAGCTGAGGAATCTGTTGTGGGCAACATCAAAGCACGATGTATACCTTATGCAAAACTACTCCGTGATGCATTGGTCCTCATTACTACGCAGGGGTAAAGAAGTGCTTAATGCAGCCAAACCGATTATTCCAACCCTTCAGAAGCATTCTGGATTAGCTCACCCTGTCTCGCGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGTGAGCTTATTTGCAAGAATTTGAATCATTCTGGAGTTGCCTTCTGCAGTAAAATAACTCCAGATGATAATGCTATAACCAATGCAGTGGATGTTTCCCGCAATCCCAGTGGGTTGTTGAGGGTTATCGCAGCAAATAATGATTCCCAAGTTCGGGTTTTTAACGCGGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTCAATAATGCTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGGGCTTGATAGCCGATGCTAATACCGGAAAGGTCACTGGAAGCCTAAAAGGGCACTTGGACTATTCTTTCGCATCAGCTTGGCACCCTGATGGACAAATATTGGCTACTGGGAATCAGGACACAACATGCAGGTTGTGGGATATAAGAAATCTTTCAGAGTCTTTAGCAGTATTAAAGGGAAGAATGGGTGCAATAAGGGCCTTAAGATTCACATCTGATGGACGGTTTTTGGCGATGGCTGAGCCAGCAGACTTCGTCCATATATTCGACTCACATTCTGGTTATTCTCAATCTCAAGAGATTGATTTATTTGGTGAGATTGCTGGTATATCTTTTAGCCCTGACACAGAGGCTCTATTTGTTGGCGTTGCTGACCGAACCTACGGTAGCTTGTTAGAGTTCACCAGAAAACGTTATTATCATTATCTAGACTCAATGCTTTAA 1356 0.4314 MDRFNNDDLEYVVDDYFDSSDFEDQQTFSDNVPQHISDSDSHHSDFEDNFDTTNATTDTTASEARNGKDIQGIPWDRLNYSRQEYRETRLKQYNNYENLSRSREELDKECLEVQKGKSFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNAAKPIIPTLQKHSGLAHPVSRVQISTMTVKENLMVAGGFHGELICKNLNHSGVAFCSKITPDDNAITNAVDVSRNPSGLLRVIAANNDSQVRVFNAENFASLGCFKYDWSVNNASVSPDGKLLAVLGDSTEGLIADANTGKVTGSLKGHLDYSFASAWHPDGQILATGNQDTTCRLWDIRNLSESLAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYSQSQEIDLFGEIAGISFSPDTEALFVGVADRTYGSLLEFTRKRYYHYLDSML 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01599 451 Gene3D - 183 443 IPR015943 GO:0005515
Car05g01599 451 MobiDBLite consensus disorder prediction 50 66 - -
Car05g01599 451 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Car05g01599 451 SMART WD40_4 213 268 IPR001680 GO:0005515
Car05g01599 451 SMART WD40_4 355 394 IPR001680 GO:0005515
Car05g01599 451 SMART WD40_4 312 351 IPR001680 GO:0005515
Car05g01599 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Car05g01599 451 SUPERFAMILY WD40 repeat-like 181 431 IPR036322 GO:0005515
Car05g01599 451 MobiDBLite consensus disorder prediction 22 68 - -
Car05g01599 451 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 450 - -
Car05g01599 451 PANTHER OS03G0386000 PROTEIN 1 450 - -
Car05g01599 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Car05g01599 451 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01599 Car-Chr5 60655480 60661255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01599 297 431 Miscellaneous Gene Families AT5G08390 30.137 2.20e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01599 - - gmx:100775453 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01599 05 60655480 60661255 Car05g01599 05 60655480 60661255 ECH