Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01592 ATGGCTATGGCTATTGCTTCTTTCCGCATTGTATTTCGTCACATGTTACACGCCAACAACACCTATAACTGCTTCTTCACTCTCCCACCCCGACCCACGTGTTTTCTTATAAATCGTCGCGCCACGTGGCGGCAGTGTCTTATTTCTTCTCGTGCAAGTTCAACTAATAACTACAGTTACAAAGTTGTTGTGAAGAAAGACGAGCGAGTTGAGAATGAAAACACTGATGTTGTAAACTCGACAACAATTGCAGCCATTGTAACATCGTTAGGTGGTCCCCCTGCTGCCGTCGGAATCGTTCGCCTTTCGGGTCCTAGCGCGGTGTCTATTGCGTGTCGGGTATTTCGACCCGCGAAGAACATGTGGCAGCCTACTAGTCATGTTGTTGAATACGGCGTCGTATTGGATTCCGATGGAAATGTCATCGATGAGGTTTTGGCGGTTCCCATGCTTGCACCGAGATCGTATACTCGTGAAGATGTGGTTGAACTTCAATGTCATGGGAATGAAGTGTGTTTGCGTCGTGTGCTTAGAACTTGTTTGGAAGCTGGAGCAACACTTGCTCAACCAGGAGAGTTTACTCTGCGTGCTTTTTTAAACGGTCGTTTGGATCTTACCCAAGCTGAAAATGTTGCAAGACTGATCGCGGCCAATTCCGTGGCTGCCGCCGATGCAGCACTGGAAGGAATTCAGGCATGTGGTGGTTTCTCTTCTCTTGTTAGATCATTGAGAAATATGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCTATAGATTTGAATGTGATTATGGATAAAATCCACCATATGTCACAAGATGTTGAGAATGCATTGGAAACGGCAAATTACGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCTAATGTCGGCAAGTCAAGCCTTCTGAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACCACTCGAGATGTGATCGAAGCAAGTATCAGCATCAATGGCATCCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAAATTGGTGTAGAGCGATCTGAAGCTGTTGCTAGAGGGGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTTGAAAAGATTCAATCTGCAAAGGAATCAACTGGATCTTCCACCCCAGTAATCCTTGTGGTCAACAAGATAGACTGCAAGCCTTATGCTGAGACTGAATGGGACAAAAGATGTCACAGTCACAAAATTTTCAGCAAACAAGTGTTTACATGTGCTGTAACCGGTCAAGGATTACAAGATTTAGAGAGGGAAGTTTTAGAGCTTGTAGGCATGGATGGCATTGCTGCTGGGGGTCGCAAATGGACCATCAATCAGAGACAATGTGAACAACTTGTTCGGACGAAGGAAGCACTTATGAGATTACAATCATCAATAATGGAAGAACTACCTCTGGATTTTTGGACAATTGATTTGAGAGATGCTGCATTGTCCCTTGGACAAATAAATGGAGAAGATATATCAGAGGAGGTTTTAACTAATATATTTGCCAAGTTCTGTATTGGTAAATAA 1647 0.439 MAMAIASFRIVFRHMLHANNTYNCFFTLPPRPTCFLINRRATWRQCLISSRASSTNNYSYKVVVKKDERVENENTDVVNSTTIAAIVTSLGGPPAAVGIVRLSGPSAVSIACRVFRPAKNMWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLTQAENVARLIAANSVAAADAALEGIQACGGFSSLVRSLRNMCIELLTEIEARLDFDDEMPPIDLNVIMDKIHHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISINGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLEKIQSAKESTGSSTPVILVVNKIDCKPYAETEWDKRCHSHKIFSKQVFTCAVTGQGLQDLEREVLELVGMDGIAAGGRKWTINQRQCEQLVRTKEALMRLQSSIMEELPLDFWTIDLRDAALSLGQINGEDISEEVLTNIFAKFCIGK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01592 548 Gene3D tRNA modification GTPase MnmE domain 2 203 548 IPR027368 -
Car05g01592 548 Gene3D - 300 476 IPR027417 -
Car05g01592 548 Pfam GTP-binding protein TrmE N-terminus 82 202 IPR018948 -
Car05g01592 548 Pfam 50S ribosome-binding GTPase 301 422 IPR006073 GO:0005525
Car05g01592 548 PANTHER TRNA MODIFICATION GTPASE GTPBP3 80 548 - -
Car05g01592 548 Pfam MnmE helical domain 205 545 IPR025867 -
Car05g01592 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 464 IPR027417 -
Car05g01592 548 CDD trmE 297 469 IPR031168 -
Car05g01592 548 Gene3D Probable tRNA modification gtpase trme; domain 1 68 202 IPR027266 GO:0005515
Car05g01592 548 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 95 548 IPR004520 GO:0003924|GO:0005525|GO:0006400
Car05g01592 548 Hamap tRNA modification GTPase MnmE [mnmE]. 81 548 IPR004520 GO:0003924|GO:0005525|GO:0006400
Car05g01592 548 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 80 548 - -
Car05g01592 548 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 299 469 IPR031168 -
Car05g01592 548 TIGRFAM small_GTP: small GTP-binding protein domain 300 430 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01592 Car-Chr5 60559540 60565058 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01592 K03650 - gmx:100818096 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01592 05 60559540 60565058 Car05g01592 05 60559540 60565058 ECH