Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01578 ATGGATGCTAAAACGGGTCTATCTCTCGGGTTGAAATCCTCCATGTTATCACCAACGGGTTCATCATCCACTGCTTCACTTACTGATAACAACAACAACAACTCTTTCTCCTTTCATATCACCTCCAAATCAAACCCTTCTCTTTCATGGCGTTTACTTCATGAAAAATCAAACAATGTGAAAAAACGagaagaagaagaagaagaacaagaagaagaagaagTTGATGATGAAGGAGAAGGTGAAACAATTGATTTCATGGGTAGACCTATATGTGTTAAGAGGAAAATTGAAGAACACTGTTTTCCACCATTGAAGCGTGTGGCAATGGATTCTTCTGTTGTGAATTGGGGGAACCAGCCACTATGTGTAGCTGATCCTGAAATATACACAATAATGGAGAAAGAGAAGATGAGACAGTTCAAAGGGATTGAATTGATTGCTTCTGAGAATTTTGTTTGCAGGGCAGTTATGGAAGCACTTGGTAGTCATTTGACTAACAAGTATTCCGAGGGAATGCCGGGAGCCAAATACTATATCGGTAATCAGTATATTGATCAGCTTGAGTTTCTTTGTTGTGAACGTGCATTGTTTGCTTTTGATCTTGATTCCAATAATTGGGGTGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTTTATACTGGTCTTTTGAATCCTGGTGATAGGATTATGGGTTTGGATTCACCTTCTGGTGGACATTTGAGTCATGGTTATTATACTCATGGTGGGAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTTTGCCTTATAAGGTTAATCCTTTGACTGGTTTAATTGATTATGATAAGCTTGAGGAGAAAGCGGTTGATTATCGACCTAAGATACTTATTTGTGGTGGTAGTTCTTATCCTAGAGAATGGGATTATGGGAGGTTTAGGAAGATTGCTGATAAATGTGGAGCTGTTTTGATGTGTGACATGGCTCATATTAGTGGTCTTGTCGCGGCTAAGGAAGTTGCTAGTCCATTTGATTACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTTCGAGGTCCAAGAGGAGGTATCGTCTTTTACAGAAGAGGGACAAAACCAAGGAAGCAAGGGTTTGTTATTAATCACGGAGATGACAGTAATTATGATTACGAGGAGAAGATAAACTTTGCTTTATATCCATCGTTACAAGGAGGTCCCCACAATAATCACACTGCTGCTCTTGCCATAGCTTTGAAACAAGTTGCAACTCCAGAGTATAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCATCTGCTCTGATGAGAAGAAAATGCCGACTGGTAACTGATGGAACTGATAATCATCTTTTGCTCTGGGATATAACTGCACTTGGCTTAATAGACAGAAACTATGAGAAGGTCTGCGAGGCGTGTCACATCACTGTCAATAAGTGTGCCATCTATGGTTCTATTTCTTCTGGAGGAGTGAGAATTGGCACTCCTGCAATGACATCAAGAGGCTGTGTAGAGGACGATTTTGAGACCATAGCCGATTTTCTTCTGAAGGCAGCTCAGATTACCAGCATCATACAGAGGGAACATGGTAAATCATGCAAAGATTTTCTAAAGGGTCTTCAGAATAATAAAGATATTTCTGAGCTCAGAAATCGGGTTGAGACATTTGGTTCCCAGTTTGAAATGCCAGGATTCAATATTTGA 1728 0.3906 MDAKTGLSLGLKSSMLSPTGSSSTASLTDNNNNNSFSFHITSKSNPSLSWRLLHEKSNNVKKREEEEEEQEEEEVDDEGEGETIDFMGRPICVKRKIEEHCFPPLKRVAMDSSVVNWGNQPLCVADPEIYTIMEKEKMRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYIGNQYIDQLEFLCCERALFAFDLDSNNWGVNVQPYSCTSANFAVYTGLLNPGDRIMGLDSPSGGHLSHGYYTHGGKKVSAASIFFETLPYKVNPLTGLIDYDKLEEKAVDYRPKILICGGSSYPREWDYGRFRKIADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIVFYRRGTKPRKQGFVINHGDDSNYDYEEKINFALYPSLQGGPHNNHTAALAIALKQVATPEYKAYMQQVKRNAQALASALMRRKCRLVTDGTDNHLLLWDITALGLIDRNYEKVCEACHITVNKCAIYGSISSGGVRIGTPAMTSRGCVEDDFETIADFLLKAAQITSIIQREHGKSCKDFLKGLQNNKDISELRNRVETFGSQFEMPGFNI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01578 575 MobiDBLite consensus disorder prediction 66 81 - -
Car05g01578 575 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 346 362 IPR019798 GO:0030170
Car05g01578 575 CDD SHMT 126 564 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car05g01578 575 Coils Coil 53 81 - -
Car05g01578 575 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 100 574 - -
Car05g01578 575 Gene3D Aspartate Aminotransferase, domain 1 126 571 IPR015422 GO:0003824
Car05g01578 575 Pfam Serine hydroxymethyltransferase 124 522 IPR039429 -
Car05g01578 575 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 100 574 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car05g01578 575 Hamap Serine hydroxymethyltransferase [glyA]. 121 572 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car05g01578 575 Gene3D - 151 430 IPR015421 GO:0003824
Car05g01578 575 MobiDBLite consensus disorder prediction 57 82 - -
Car05g01578 575 SUPERFAMILY PLP-dependent transferases 117 572 IPR015424 -
Car05g01578 575 MobiDBLite consensus disorder prediction 10 39 - -
Car05g01578 575 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01578 Car-Chr5 60373243 60378059 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01578 K00600 - gmx:100776419 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01578 05 60373243 60378059 Car05g01578 05 60373243 60378059 ECH