Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01577 atggctgcttctctctcgaaccaatccctgttactcggttgttgttcatgttcTTCCGCTTCATTCTCTTCAAACCCCTTTCAATCTCGATTACAACCCAATTTCGCACGTTTTCCATATCGTCCCTTTCACGCATCCTCAACTATCTTAGGGTTTCCTGCCCCCCTTTCCTCTCTCAACCGAACCGAACTCTTCAAATCCTATCTCGCTTCTCAAGATTCCATTCCAACGACAAATGATGACACAGAGGAGACTCAGAATGATACAAGAGTGAAAAATGAAGATAAAAAACCTTTAACCAGCTTAGTGGTCCTTTTTGAGGAATACAAGAAATCCTTTCTCAATGGCAATGAAAAGACTGCATCACAGATTGAAGAAAGAATACAATCAAAGGCAAATAAAAAGAATAAATTGAGTCAGAAAGTATCTAGTCTATCGGCAGATAAAGTTTCTTGTAAGGAGCAATATCTTCGCTTACAAGCAGATTTTGATAACTTCAGGAAGAGATGTGACAAAGAAAGAATTAGCATCCAATCAGATGCCCAACTAGAATTCATTAAAAAGCTTTTGTTCATGGTCGACCATTTTGAGAGAGTCAAACAACAAAGTGAAGCAGCAACGGAGAAAGAGAAGAAGATTGATGCGAGCTATCAAAGTATTTACAAGCAATTTGTAGAGACTTTGAGGAGCCATCATGTTTCTGTGGTAGCAACAGTGGGCAAGCCTTTTAATCCATTGCTACATGAAGCCGTTGCACGTGAGGAGTCTGACGTGTTCAAGGAAGGGATTATTATTAAAGAATCCCGACGAGGTTTCTTGCTCAGAGATAAGGTTTTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCTGGGAATAAGAAATCTTCAGTAGCACCTGCCAAGTCCTTGGAGCAAACAGCTGCTAGAATTGATGAAAGATAA 942 0.3779 MAASLSNQSLLLGCCSCSSASFSSNPFQSRLQPNFARFPYRPFHASSTILGFPAPLSSLNRTELFKSYLASQDSIPTTNDDTEETQNDTRVKNEDKKPLTSLVVLFEEYKKSFLNGNEKTASQIEERIQSKANKKNKLSQKVSSLSADKVSCKEQYLRLQADFDNFRKRCDKERISIQSDAQLEFIKKLLFMVDHFERVKQQSEAATEKEKKIDASYQSIYKQFVETLRSHHVSVVATVGKPFNPLLHEAVAREESDVFKEGIIIKESRRGFLLRDKVLRPALVKVSLGPGNKKSSVAPAKSLEQTAARIDER 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01577 313 Gene3D Head domain of nucleotide exchange factor GrpE 232 287 IPR009012 GO:0006457
Car05g01577 313 Hamap Protein GrpE [grpE]. 80 288 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 CDD GrpE 153 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 Gene3D - 115 229 IPR013805 -
Car05g01577 313 Pfam GrpE 125 287 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 234 288 IPR009012 GO:0006457
Car05g01577 313 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 136 231 IPR013805 -
Car05g01577 313 PRINTS GrpE protein signature 157 173 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 PRINTS GrpE protein signature 185 200 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 PRINTS GrpE protein signature 240 255 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 PRINTS GrpE protein signature 267 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 ProSitePatterns grpE protein signature. 243 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 PANTHER GRPE PROTEIN 1 305 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car05g01577 313 MobiDBLite consensus disorder prediction 292 313 - -
Car05g01577 313 Coils Coil 121 141 - -
Car05g01577 313 PANTHER GRPE PROTEIN HOMOLOG 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01577 Car-Chr5 60365241 60368878 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01577 K03687 - gmx:100809893 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01577 05 60365241 60368878 Car05g01577 05 60365241 60368878 ECH