Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01574 ATGGAAAACGCCGACGTGTTTTTGGGTTTACACGACTTCCTCGAGCGCATGCGCCAACCCGCCGCCGCCGATTTCGTCAAAGCAATCAAAAGTTTCATAGTTTCGTTTTCAAATAATGGTCCCGATCCTGATAGAGACAGTAGCGCCGTACAAGACTTCCTTGCCAATATGGAAGCTGCTTTCAAAGCTCATCCACTTTGGTCCGGTTGCTCTGAGGACGAGCTTGAAAGTGCTGGTGAAGGTCTTGAGAAGTATGTCATGACGAAGTTGTTTGCCCGTGTATTTGCTTCAGTTCCTGATGATGTAAAACTTGATGACCAACTTTCAGAGAAGATGTCTCTGATTCAACAGTTTATTCGACCAGAAAATTTGGACATCAAGCCAACATTTCAGAATGAAACATCATGGTTGCTTGCACAGAAAGAATTACAAAAGATCAACATGTACAAGGCACCCAGAGACAAACTTATCTGTATCCTAAACTGTTGCAAGGTTATTGGCAACTTGCTGCTTAATGCTTCTGTTGCTTCCAAAGATAGTCCTCCTGGAGCTGATGAATTTCTTCCTGTGCTAATTTATGTTACCATAAAGGCAAACCCTCCTCAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGTGATTCTCGTTTGGTTGGGGAAGCATCGTATTATTTTACAAACATGCTTTCTGCTGAATCCTTCATCTCAAACATTGATGCAAAAGCCATTTCAATGGATGAAACCGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTCTTCTTTCAGGGCTTTCAGTTGATACGCAAGATCCCAATTCACCTTATCAAAATTATGGACAGCATCCAAGAGCAGACAGAAATAAAGCTTTGAATGACAATAAGGACCCTGCACTACGAACTCCACCATCTGTTGCAAAATTAGAAAGTAAGAAAGTGACTTTTGCAGATGAATCATTGATAACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATAATAAAGGAGGATAAGTTGAATGATGTTTTCAGGGATTGTCCATACTTGTTTGCTAGTGCTGGTGATCTAACAATAGATGACGTCGAAGACCTGCTAAATAATTACAAACAATTAGTTTTCAAGTATGTGTGTCTTTCCAAAGGGTTAGGTATCAATTCTACATCTCATCTTCCATCCAATCCTCAAAGTAATGCTCAGGACCATTCTGAAGCCCTTTTCAAAGGGTTAGCCGTTGCTTCTTCACATCATCTTCCATCCAATTCTCAGAATAATGCTCAGGACCATTCTGACACCACAATAGATTCTTCAGACGGTGGACCTGTAGCTTCCAATGACAAATCAGAAAAATCTAGAGATACATTAGAAGATAACTCAGTTCCTGAGGAGAAAAAAAGTGATTCAAGTTTGCCACAAAATGAAGCAGTTGCACAGCTAGAGGCAGTTGCACCAGAGGATGGTGCCCTCTCGTGA 1488 0.4106 MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNGPDPDRDSSAVQDFLANMEAAFKAHPLWSGCSEDELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMSLIQQFIRPENLDIKPTFQNETSWLLAQKELQKINMYKAPRDKLICILNCCKVIGNLLLNASVASKDSPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRRDSRLVGEASYYFTNMLSAESFISNIDAKAISMDETEFERNMEFARALLSGLSVDTQDPNSPYQNYGQHPRADRNKALNDNKDPALRTPPSVAKLESKKVTFADESLITKVPSLSDLENKGASMIIKEDKLNDVFRDCPYLFASAGDLTIDDVEDLLNNYKQLVFKYVCLSKGLGINSTSHLPSNPQSNAQDHSEALFKGLAVASSHHLPSNSQNNAQDHSDTTIDSSDGGPVASNDKSEKSRDTLEDNSVPEEKKSDSSLPQNEAVAQLEAVAPEDGALS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01574 495 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Car05g01574 495 SMART vps9_2 135 254 IPR003123 -
Car05g01574 495 MobiDBLite consensus disorder prediction 450 474 - -
Car05g01574 495 PANTHER BNAC09G47180D PROTEIN 1 411 - -
Car05g01574 495 MobiDBLite consensus disorder prediction 421 449 - -
Car05g01574 495 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Car05g01574 495 Gene3D VPS9 domain 99 265 IPR037191 -
Car05g01574 495 Gene3D - 17 97 - -
Car05g01574 495 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Car05g01574 495 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Car05g01574 495 MobiDBLite consensus disorder prediction 269 303 - -
Car05g01574 495 MobiDBLite consensus disorder prediction 421 495 - -
Car05g01574 495 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 411 IPR045046 GO:0005085|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01574 Car-Chr5 60336392 60341302 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01574 K20131 - gmx:100810958 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01574 05 60336392 60341302 Car05g01574 05 60336392 60341302 ECH