Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01552 ATGATCTCTGTTTATGCAAAGTGTTCAAGTTTCTACGATGCACGTAACCTATTCGACGAAATGCCTCATAGAAACATAATTTCTTGGACAACAATGGTCTCTGCATTCACTAATTCTGGCATGCCCCACGAAGCTCTAAATCTTTACAACCAGATGCTGGAATCTAAAACAGAACAACCTAATCACTTTTTGTACTCTGCGGTTCTTAAAGCTTGTGGTCTTGTGAGAAATGTTGAATTGGGCAAGTTGGTTCATTACCGAATTTTTCAATCTAAGTTAGATATTGATACTGTTTTGATGAATGCCCTTTTGGATATGTACGTCAAATGTGGTAGTTTGAAAGCTGCCCAACAAGTTTTCTATGAAATCAAGTGTAAAAATGCTACTTCATGGAACACCCTCATTTTGGGACATGCTAAACAAGGTTTGATTGGTGATGCGATGAAACTGCTAGATAAAATGCCGGAACCAGATATTGTATCTTGGAACAGCATCGTTGCTGGTCTTGTAGATAGTGCTAGTCCTCATGCGTTGCAATTTGTTTCGATGATGCACATGAAGGACCTTAAATTGGATGAATTCACATTGCCAAGTGCCCTCAAAGCTTGTGGTTTTAGTGGTGAATTAACGTTAGGAAGACAGATTCATTGTTGTATTATTAAGGCAGGGTTTGAGTCTAGCTGTTTTTGTATATCGGCGTTGATTGATATGTATTCGATTTGCAAGCTATTGGGCAAAGCAATGAAGATTTTTTATCAATTCTTTAGGAATTCTCCTGTTTCTGAAAGCTTTGCACTTTGGAATTCTATGCTTTCTGGGTATGTTGCCAATGGAGATTATGTTGAAGCACTCCGTCTGATTTCTCATATGCATCATTCTGGTGTACACTTTGATCTTTATACCTTTAGTATTGCTTTGAAGATCTGTGTCAACTTCACTAACCCGAGTTTGGCATCTCAAGTGCATGGATTGGTCATCACTAGTGGCTATGAGTTAGATTGTATTGTTGGGAGCATTCTTATTGATCTATATGCAAAACAGGGCAATATTAACAATGCATTAAGATTGTTTGAGAGGTTGCCAGATAAAGATGTTGTAGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAGATTCGGTTCAGATAAATTAGCTTTTTCCCTTTTCATGGACATGTTTCATTTGGGTCTTCAGATTGACCATTTTGTTGTTTCAATTGTTCTAAAAGCTTGTTCAAGTTTGGCATCTCATCAACGTGGCAAGCAAGTTCATGCTTTATGTCTAAAGAAGGGGTATGCATCCGAGAGAGTAATTACAACTGCTCTAATCGATATGTATGCAAAATGTGGTGACATCGAGGATGCCTTAGCTTTGTTTGGTTGTCTCTTGGAAATCGATACCATGAGTTGGACAGGTATTATTGTGGGATGTGCACAAAATGGAAGAGCAGATGAGGCAATTAGTCTTCTGCATAAGATGATAGAATCTGGTACACTGCCAAACAAAATCACCATTCTAGGTGTTCTTACTGCTTGTAGGCATGCTGGCCTCGTTGAAGAGGCATGGGCTGTGTTTAATTCTATTGAAACAAAGCACGGATTGATGCCGTGCCCAGAACATTATAACTGTATGGTTGATATTCTTGGTCAAGCAGGACGTTTTGAAGAAGCGGGGAAATTGATTTGTGAAATGCCATTTAAGCCCGACAAAACTATATGGTCTTCCTTGCTTAGTGCCTGTGGAACTTACAAGAACCGACATCTTGCAAAGATTGTTGCTGAGCATCTCCTTGCTACCTCGCCAGAAGATGTTTCTGTATACATAATGGCGTCAAATGTTTATGCATCTCTTGGAATGTGGGATAGTTTGAGCAAAGTCAGAGAAGCTGTAAAAAAAGTAGGGAGAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 1941 0.3921 MISVYAKCSSFYDARNLFDEMPHRNIISWTTMVSAFTNSGMPHEALNLYNQMLESKTEQPNHFLYSAVLKACGLVRNVELGKLVHYRIFQSKLDIDTVLMNALLDMYVKCGSLKAAQQVFYEIKCKNATSWNTLILGHAKQGLIGDAMKLLDKMPEPDIVSWNSIVAGLVDSASPHALQFVSMMHMKDLKLDEFTLPSALKACGFSGELTLGRQIHCCIIKAGFESSCFCISALIDMYSICKLLGKAMKIFYQFFRNSPVSESFALWNSMLSGYVANGDYVEALRLISHMHHSGVHFDLYTFSIALKICVNFTNPSLASQVHGLVITSGYELDCIVGSILIDLYAKQGNINNALRLFERLPDKDVVAWSSLIAGCARFGSDKLAFSLFMDMFHLGLQIDHFVVSIVLKACSSLASHQRGKQVHALCLKKGYASERVITTALIDMYAKCGDIEDALALFGCLLEIDTMSWTGIIVGCAQNGRADEAISLLHKMIESGTLPNKITILGVLTACRHAGLVEEAWAVFNSIETKHGLMPCPEHYNCMVDILGQAGRFEEAGKLICEMPFKPDKTIWSSLLSACGTYKNRHLAKIVAEHLLATSPEDVSVYIMASNVYASLGMWDSLSKVREAVKKVGRKGAGKSWIEISS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01552 646 SUPERFAMILY TPR-like 43 620 IPR011990 GO:0005515
Car05g01552 646 TIGRFAM PPR: pentatricopeptide repeat domain 130 155 IPR002885 -
Car05g01552 646 TIGRFAM PPR: pentatricopeptide repeat domain 540 563 IPR002885 -
Car05g01552 646 TIGRFAM PPR: pentatricopeptide repeat domain 468 500 IPR002885 -
Car05g01552 646 TIGRFAM PPR: pentatricopeptide repeat domain 266 298 IPR002885 -
Car05g01552 646 TIGRFAM PPR: pentatricopeptide repeat domain 27 58 IPR002885 -
Car05g01552 646 Pfam PPR repeat family 266 309 IPR002885 -
Car05g01552 646 Pfam PPR repeat family 25 72 IPR002885 -
Car05g01552 646 Pfam PPR repeat family 363 411 IPR002885 -
Car05g01552 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Car05g01552 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Car05g01552 646 Gene3D Tetratricopeptide repeat domain 84 156 IPR011990 GO:0005515
Car05g01552 646 Gene3D Tetratricopeptide repeat domain 439 646 IPR011990 GO:0005515
Car05g01552 646 Gene3D Tetratricopeptide repeat domain 171 316 IPR011990 GO:0005515
Car05g01552 646 Gene3D Tetratricopeptide repeat domain 317 436 IPR011990 GO:0005515
Car05g01552 646 Pfam PPR repeat 99 126 IPR002885 -
Car05g01552 646 Pfam PPR repeat 439 463 IPR002885 -
Car05g01552 646 Pfam PPR repeat 539 563 IPR002885 -
Car05g01552 646 Pfam PPR repeat 468 496 IPR002885 -
Car05g01552 646 Pfam PPR repeat 130 156 IPR002885 -
Car05g01552 646 PANTHER BNAC03G28070D PROTEIN 41 641 - -
Car05g01552 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Car05g01552 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Car05g01552 646 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515
Car05g01552 646 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 641 - -
Car05g01552 646 Pfam E motif 582 643 IPR046848 -
Car05g01552 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01552 Car-Chr5 60051720 60053660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01552 1 644 Glycoside Hydrolase AT3G49170 30.653 3.31e-103 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01552 - - mtr:MTR_3g072900 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01552 05 60051720 60053660 Car05g01552 05 60051720 60053660 ECH