Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01518 ATGGCCGATCAGTTAGCTAGGGCTGAGGAATTCGAGAAGAAAGCTGAAAAGAAGCTCAGCGGTTGGGGCTTATTCGGCTCTAAATACGAAGACGCTGCTGATCTCTTCGATAAAGCTGCAAATTCCTTCAAGCTTGCTAAATCATGGGACAAAGCGGGATCAACCTACCTAAAGTTGGCGAATTGTCATTTAAAGTTGGAAAGCAAGCATGAGGCTTCACAGGCTTACGTTGATGCTGCACATTGCTATAAAAAGACCAATATAAATGAGGCTATATCTTGCTTAGACCATGCAGTGAATCTTTTGTGTGATATTGGTCGACTCTCTATGGCTGCCAGATATTTGAAGGAAATTGCAGAGTTGTATGAATCCGAACAGAATATTGAGCAGGGTGTTGTTTACTATGAAAAATCAGCCGATTTTTATCAAAATGAAGAGGTGACAACTTCTGCAAACCAGTGCAAGCAGAAAGTGGCCCAATTTGCTGCTCAGCTGGAACATTATCAGAAGTCAATTGAGATTTATGAAGAGATCGCACGCCAATCGCTAAACAATAACTTGCTGAAGTATGGAGTTAAGGGCCATCTTCTTAATGCTGGCATTTGCCAACTTTGCAAAGGGGATGTTGTTGCCATAAACAATGCATTAGAGAAATATCAGGAATTAGATCCAACATTTTCAGGAACGCGTGAATATAGATTATTGGCGGATATTGCTTCTGCAGTTGATGAAGAAGATGTTGCAAAGTTTACTGATGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAGGAGCTGGAGGAGGATGATCTCACATAA 870 0.4138 MADQLARAEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGSTYLKLANCHLKLESKHEASQAYVDAAHCYKKTNINEAISCLDHAVNLLCDIGRLSMAARYLKEIAELYESEQNIEQGVVYYEKSADFYQNEEVTTSANQCKQKVAQFAAQLEHYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAINNALEKYQELDPTFSGTREYRLLADIASAVDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01518 289 CDD SNAP 20 278 IPR000744 GO:0006886
Car05g01518 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Car05g01518 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Car05g01518 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Car05g01518 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Car05g01518 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Car05g01518 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Car05g01518 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Car05g01518 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Car05g01518 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Car05g01518 289 Gene3D Tetratricopeptide repeat domain 4 288 IPR011990 GO:0005515
Car05g01518 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01518 Car-Chr5 59553175 59558275 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01518 K15296 - gmx:100814639 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01750 02 46623756 46628433 Car05g01518 05 59553175 59558275 ECH
Car05g01518 05 59553175 59558275 Car05g01518 05 59553175 59558275 ECH
Car05g01518 05 59553175 59558275 Car02g01750 02 46623756 46628433 PCT