Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01152 ATGTCGTCGAGTGATGAAGAACAAGAACAGAAGAAGAATGGTAATGGCGGAGGAATACTCGATTTCATAATGAATTTAGAAGACGTTCCATCCAAGCTCTCTCCACATCTTGAACTTATCAAAACTCGCGTTGTTTGCAGTATCGATGCTCCTCAGCATACAGATACCATAAATTATTCTGGCGCTTATGCAGCATTAGGAGTTGATAACAGTGTACGGTTGGACAGTTTCTGTCAAAACTTCAAGGTTGAAGTGAAAAAGTTGACAGATGATGACATTGAGTTTGACATGATTGGTATTGATCCATCACTTGCCAATGCTTTTCGAAGAATTCTCATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATTGCAAACAATACATCAATTATACAAGACGAAGTTCTATCCCATAGATTGGGTCTTATTCCAATCAATGCTGATCCCACACTATTTGAATATCCAGACAATGCGGGAGGTGAAAACAATGAAAAAAACACCATTGTCTTCAAACTACATGTTCGTTGTGAAAAGGGTCAACCTCGTATTACTGTAAAATCAGATGAATTGAAGTGGTTGCCTAACGGGAGTGATCTTATTGCTGACGACACCAAACCAAATGCTGGTTCAAAACCAAAAACATTTACATCTTTTAGTTGCAGTCAAGACTCACTTCCTGAATTCTCCAAAAAACCACTTGGTCCTACTAATCCGGATATTATATTAGCTAAACTTGGACCTGGTCAGGAAATCGAACTTGAAGTTCATGCTGTTAAAGGTGTTGGTAAGACACATGCAAAATGGTCTCCGGTTGCTACTGCTTGGTATCGAATGCTTCCCGAGGTTGTACTCACGGAAGATGTTACGGATGAGCTGGCCGACGAACTAGTAACTAAATGTCCAGTTAATGTCTTTGATATCGAAGATATTGGAAAAGGTAGAAAAAGGGCTACCGTAGTCAAACCACGGGCATGCACTTTGTGTAGGGAGTGCATCAGAGGAGGGAAAGAATGGGAGGATCGTGTGTCACTGCGTCGTGTCAAAGATCATTTCATTTTTACAATTGAATCAACTGGAGCAATTCCACCTGAAGTGCTATTTACTCAAGCTGTGAAGATTCTGGAAGATAAGTGCGAACGTGTGATTACCGAGCTTTCTTGA 1167 0.4036 MSSSDEEQEQKKNGNGGGILDFIMNLEDVPSKLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCQNFKVEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAIERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKGQPRITVKSDELKWLPNGSDLIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKKPLGPTNPDIILAKLGPGQEIELEVHAVKGVGKTHAKWSPVATAWYRMLPEVVLTEDVTDELADELVTKCPVNVFDIEDIGKGRKRATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPEVLFTQAVKILEDKCERVITELS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01152 388 Gene3D - 83 379 IPR036603 GO:0006351|GO:0046983
Car05g01152 388 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 94 380 IPR011263 GO:0003899|GO:0006351
Car05g01152 388 Gene3D - 118 268 IPR036643 -
Car05g01152 388 PANTHER DNA-DIRECTED RNA POLYMERASE 20 388 - -
Car05g01152 388 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 117 272 IPR036643 -
Car05g01152 388 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 82 387 IPR022842 GO:0003899|GO:0006351
Car05g01152 388 PANTHER BNAA01G22480D PROTEIN 20 388 - -
Car05g01152 388 Pfam RNA polymerase Rpb3/RpoA insert domain 124 271 IPR011262 GO:0003899|GO:0006351|GO:0046983
Car05g01152 388 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 106 146 IPR001514 GO:0003677|GO:0003899|GO:0006351
Car05g01152 388 SUPERFAMILY RBP11-like subunits of RNA polymerase 79 387 IPR036603 GO:0006351|GO:0046983
Car05g01152 388 CDD RNAP_I_II_AC40 81 386 IPR033901 GO:0001054|GO:0001056
Car05g01152 388 SMART rpoldneu2 92 386 IPR011263 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01152 Car-Chr5 54147290 54151936 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01152 K03027 - gmx:100786622 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01152 05 54147290 54151936 Car05g01152 05 54147290 54151936 ECH