Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01138 ATGAAACCACGAAAACTTCCTTCTTCGGCACTCTCACGTGCGCTGTCACGTGCCTTAAGCACTTCAACCACTACGACCACACCACTTCAATGCGGATCGGCGTTTCCCTCGAAGACGGTAACCGTTTCAAACTTCGAGCCTTCGTTAGCGGAGCTCCGGCACCATGTCCGGTCGTCGGACTTCGTTGCCATCGACCTCGAGATGACAGGCGTCACTAGTGCGCCGTGGCGTGAGTCCTTCGAGTTTGACCGCTCCGATGTTCGGTATCTCAAGGTCAGAGACTCCGCGAGCAGGTTCGCCGTCGTTCAATTTGGCGTCTGTCCGTTCCGATGGGATCCATCCAATCAGTCCTTCGTCGCTTATCCGTACAATTTCTATGTTTTTCCACGTCCAGAGCTTGCAGGTTTTGGCCCATGTAATGATTTTCTCTGCCAGACCACTTCGATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCATGCATACATGAAGGAATATCTTATTTGTCCAGAGAACAAGAAAGAGAAGCAGTAAGAAGTTTGAATTCAACACATGATAGTGACTGGTCAGACATTTCTAAATTAAATGATGTTAGGGACATACCAAATGTCAATATGGCAGACATTTTGTTCACTGCACGAATGAAAAATAAGTTCAGTGAATGGCGTGATGGGTTACTACAGGAGCAAACTCAATCAGACCATATTCAAGGAACTCAGAAAGACTCAAAACAACAATTTCAAGTGATTTTCTTTAAAACACATCCAGCTCTCAAGCTTGATGGATTCACCTCACGTCAGCTTAAGTTGATTCAGTTGGTCATCAAAAAACACTTCAAAGATCTTTCTTATATCAATGTGAACAGAGAGGCTTCTGGTTTACAACAAATAGTTGTGTATACAGACTCAGCGGATGAACTAAACTTACTTCTGAAGGAGGTAAAAGAGGAAAATCACAGGGCAAAAGAGATGAAGATCCAAGCTGCAATCGGATTTCGCCATGTTATTGATGTCCTTTCGTCAGAACAGAAGTTGATAGTTGGTCATAACTGTTTTCTAGATATGGCTCATGTCTACAGCAAATTTATCGGTCCCCTTCCTGGGACTCCCGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCACACATTATTGACACCAAAATACTCCTGAACACTAATTATATGCTCCAAGAAAGAATGAAAAAGTCCAGAAAATCACTGGCCTCTGCATTTTCTATGTTTTGTCCACTAATTGCTGCAGGCTCCAACAGCACCGGGCTAATTTCAGCATCCCTTGTCAAAGTAAACATTGAAGTTGATGATTCAAGATCGTCAAGCTGGAACCCTGGAGGCAAGCACGAGGCAGGATACGATGCTTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGAGTTGATTTTAAACTCCATGAATCTTCAAAACAATTAGCTTCAAATGAGAAACTACAGAATTACATTAATCATCTATATCTTAGTTGGTTGCATGGGGATATTATTGATCTAAATACCGGCGATAAGGTTGCAAATACTTTACCAAGCTATAACCTCAAGAAACGCTACCCAAATATTTTGTTCGAGAACATTGTCATTATTTGGGGATTTCCTACTAAGCTAAAGGCAAACGAAGTACGAGAGTGTATATCGAAAGTTTTTGGTCTAACATCTGTTGTTTCTGTCTACCACTTGGATGCAACAGCAGTGTTCGTTCAGTTTAGCAAAACTGAACTAGTTTCGGATTTTCTTTTATTGAAGGAAAAGTTAGAGACAAGTAATGGTCCAATCTTGGTTTTGCATCCGCTGGCAAAACTGTTGGATGGTGGAAATACATGTGCTGCTAATTATGATACTTATAAAGAAATTTGTGGTTCACCCTTATCAGAAAGTCTGTTTGCTGATCAAGCAAAGGCCGTTATCTTGAAGTCGAAAACCAAATCGATCGAATACAAGGTAACATCGAGGAGGAAAGAACATAAAAATGCAAGTGTAGAGGATAATGAAAAAGATGCAGCTATGAAATTTGTAGAAAAGATCAAGCCAAATACAATTGATCAGATAAGAAATGTTGAATCTCGTAGGCAAGCCTCCCAATTTGAGATTGAAGATTCCTGTGTCGCAGAAGCCAACTTGTGA 2166 0.4123 MKPRKLPSSALSRALSRALSTSTTTTTPLQCGSAFPSKTVTVSNFEPSLAELRHHVRSSDFVAIDLEMTGVTSAPWRESFEFDRSDVRYLKVRDSASRFAVVQFGVCPFRWDPSNQSFVAYPYNFYVFPRPELAGFGPCNDFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQEREAVRSLNSTHDSDWSDISKLNDVRDIPNVNMADILFTARMKNKFSEWRDGLLQEQTQSDHIQGTQKDSKQQFQVIFFKTHPALKLDGFTSRQLKLIQLVIKKHFKDLSYINVNREASGLQQIVVYTDSADELNLLLKEVKEENHRAKEMKIQAAIGFRHVIDVLSSEQKLIVGHNCFLDMAHVYSKFIGPLPGTPEEFVASVNKCFPHIIDTKILLNTNYMLQERMKKSRKSLASAFSMFCPLIAAGSNSTGLISASLVKVNIEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGVDFKLHESSKQLASNEKLQNYINHLYLSWLHGDIIDLNTGDKVANTLPSYNLKKRYPNILFENIVIIWGFPTKLKANEVRECISKVFGLTSVVSVYHLDATAVFVQFSKTELVSDFLLLKEKLETSNGPILVLHPLAKLLDGGNTCAANYDTYKEICGSPLSESLFADQAKAVILKSKTKSIEYKVTSRRKEHKNASVEDNEKDAAMKFVEKIKPNTIDQIRNVESRRQASQFEIEDSCVAEANL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01138 721 Pfam CAF1 family ribonuclease 40 468 IPR006941 -
Car05g01138 721 Gene3D - 265 518 IPR036397 GO:0003676
Car05g01138 721 Gene3D - 39 206 IPR036397 GO:0003676
Car05g01138 721 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 36 654 - -
Car05g01138 721 SUPERFAMILY Ribonuclease H-like 39 480 IPR012337 -
Car05g01138 721 Coils Coil 305 328 - -
Car05g01138 721 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 36 654 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01138 K01148 - gmx:100784997 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01138 05 53770959 53776246 Car05g01138 05 53770959 53776246 ECH