Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01066 ATGGTTACAGAGGAAGAAATATCTGAAGCGATACATTCGTTGTTCAGAGAATCAAACCCTAGAACTAGAACCTTCACTACATTGAACCAAGTTGTTCAAGAGCTTCAATCAAAACTTGGTCATGATCTTACCCATAAACTCGATTTCATCACATCTCAGATCAATCTCCTTTTTGCTTCTCAACAACCACCTCCGCAACTTCCACATAGGCAGTTacaaccaccacaacaacagcaacaacaaccaccacctcaacaactacTTTTTCCTCCTAAGGACCATTTTGCCCTTCACCAAAACCCTAATTCCCACTCTGTCCCTGTTACTTCTGCTTCTTTTCACACCCTCCCTACTAACTCTGTTGCTCTTGATGCTCCTGTTACTCAACCTCCTCCTCTTTCAGCCAATGAGGTTACCAAAGAAAGTGTTCAACCTAAGGCAAAGAGAAGAGGTGGCCCTGGAGGTCTCAACAAACTTTGCGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGCCAAGGACTGAGATTGTGAAGCAACTATGGGCGTACATAAAGAAAAATAATCTCCAAGATCCTAGCAACAAAAGGAAGATAATTTGCAATGATGAACTGCGTGTGGTGTTTGAGACGGACTGTACTGATATGTTCAAGATGAATAAGTTGCTGGCTAAACACATAATCGCCCTTGAACCAACCAAACAGCCTGCCCCAAAGAAACAGAAGGTAGATGTGGAGTTGGGAACAAGAAGCGCCGAACCTACTCCTTCTGTTATAATATCTGATTCACTTGCTAACTTTTTTGGCATTTCCGGAAGGGAGATGCTACAGACAGAGGTTCTGAGACGTATTTGGGAGTACATAAAGGTCAACCATCTAGAGGATCCTGTGAATCCTATGGCAATAATGTGTGATGCTAAGCTTCAAGAGATCTTCGGCTGTGAAAGCATTTCAGCATTGGGGATTCCTGAAGTTTTGGGCCGTCATCATATTTTTAGGAGATCATGA 1017 0.411 MVTEEEISEAIHSLFRESNPRTRTFTTLNQVVQELQSKLGHDLTHKLDFITSQINLLFASQQPPPQLPHRQLQPPQQQQQQPPPQQLLFPPKDHFALHQNPNSHSVPVTSASFHTLPTNSVALDAPVTQPPPLSANEVTKESVQPKAKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIALEPTKQPAPKKQKVDVELGTRSAEPTPSVIISDSLANFFGISGREMLQTEVLRRIWEYIKVNHLEDPVNPMAIMCDAKLQEIFGCESISALGIPEVLGRHHIFRRS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01066 338 ProSiteProfiles SWIB/MDM2 domain profile. 256 335 IPR003121 -
Car05g01066 338 SUPERFAMILY SWIB/MDM2 domain 254 333 IPR036885 -
Car05g01066 338 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 334 - -
Car05g01066 338 Gene3D SWIB/MDM2 domain 151 240 IPR036885 -
Car05g01066 338 Gene3D SWIB/MDM2 domain 252 337 IPR036885 -
Car05g01066 338 SMART swib_2 257 338 IPR019835 -
Car05g01066 338 SMART swib_2 156 235 IPR019835 -
Car05g01066 338 ProSiteProfiles SWIB/MDM2 domain profile. 155 232 IPR003121 -
Car05g01066 338 Pfam DEK C terminal domain 2 58 IPR014876 -
Car05g01066 338 MobiDBLite consensus disorder prediction 61 111 - -
Car05g01066 338 CDD SWIB-MDM2_like 261 332 - -
Car05g01066 338 CDD SWIB-MDM2_like 160 230 - -
Car05g01066 338 MobiDBLite consensus disorder prediction 125 158 - -
Car05g01066 338 PANTHER - 1 334 - -
Car05g01066 338 Pfam SWIB/MDM2 domain 262 332 IPR003121 -
Car05g01066 338 Pfam SWIB/MDM2 domain 160 230 IPR003121 -
Car05g01066 338 SUPERFAMILY SWIB/MDM2 domain 149 235 IPR036885 -
Car05g01066 338 MobiDBLite consensus disorder prediction 67 89 - -
Car05g01066 338 Gene3D - 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01066 Car-Chr5 52228850 52231293 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Car05g01066 SWIB 4.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01066 K15223 - gmx:100801960 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01066 05 52228850 52231293 Car05g01066 05 52228850 52231293 ECH