Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01052 ATGCTTCCTCAGCGCATGAAAAAAGCTGTTACTGATAACCCTAAAAAGCTTGCCAACTTGATTGACCTCGTTAACCTTCCTTCCACTCTCAGAGACTTCATCGGTCAATCTCAAACTTCTCGTTTATCTTGCTTCATGCGTGTTTGGTCTTACATCAAAACCAACAATCTCCAGGATCCAAATAACAAGAATGTGGTGAACTGTGATGAGAAGTTGAAAGGTATTTTACTTGGGAAACCTCAGGTTGATTTAGCAGAACTTCCAGAACTTATCAAGCTACATTTTCCGAAAGAGCCAAAGTGA 303 0.4026 MLPQRMKKAVTDNPKKLANLIDLVNLPSTLRDFIGQSQTSRLSCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKGILLGKPQVDLAELPELIKLHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01052 100 SMART swib_2 20 100 IPR019835 -
Car05g01052 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 99 - -
Car05g01052 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Car05g01052 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Car05g01052 100 PANTHER OS09G0133000 PROTEIN 2 99 - -
Car05g01052 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Car05g01052 100 Gene3D SWIB/MDM2 domain 15 100 IPR036885 -
Car05g01052 100 CDD SWIB-MDM2_like 24 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01052 Car-Chr5 51974597 51976168 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Car05g01052 SWIB 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01052 - - adu:107471538 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01052 05 51974597 51976168 Car05g01052 05 51974597 51976168 ECH