Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00945 ATGGCTTCATCCATCACAACCCTCAACTCATCAAGATTACTTCCCATTTCCAAAGAACAAAACTACCCATCTTCCCATTTTCACTCAAACCTTCTAAAGGTTTCATCTTTCCCTTCTAGAACCtcttcttcttcttattctctttcttgttctGTTACTAAAGACCCTTCCTCTGTTCTTCCATTGCTGGATCATACGAAGCTTGATAATGGGTCGGTTGTGCATCAACGACCCGATTCGTTTGGGAGGTTTGGGAAATTTGGTGGGAAATATGTTCCTGAAACTCTTATGCATGCTCTCACTGAACTTGAGGCTTCTTTCTATTCCCTTACTGCTGATGAAGATTTTCAGAGAGAGCTGGCAGGGATTCTAAAGGACTATGTTGGTCGGGAGAGTCCTCTTTATTTTGCGGAAAGGTTGACGGAGCATTACAAGAGGCCTAATGGTGAAGGGCCTCACATTTACCTGAAGAGGGAAGATCTTAACCACACCGGTGCTCATAAAATTAACAATGCTGTTGCACAAGCTTTGCTTGCCAAGAGTTTGGGCAAAAAACGTGTTATTGCTGAAACCGGAGCTGGACAGCATGGAGTTGCTACTGCTACTGTATGTGCTCGATTTGGTTTAGAATGCATTATTTATATGGGTGCACAGGATATGGAAAGGCAATCACTGAATGTTTTCAGAATGCGTCTTCTTGGTGCTGAGGTGAGACCAGTCCATGCTGGGACTGCTACACTTAAGGATGCTACATCCGAGGCAATAAGGGACTGGGTTACCAACGTTGAAACAACTCATTATATTTTGGGTTCTGTTGCCGGGCCGCATCCATATCCGATGATGGTGAGAGAGTTTCATGCTGTGATTGGCAAAGAAACCAGAAAGCAAGCATTGGAAAAATGGGGAGGAAAACCAGATGTTCTGATTGCATGTGTCGGTGGAGGTTCAAATGCCATGGGACTTTTCCATGAATTTGTTGATGACAAAGATGTTAGGCTAATTGGCGTGGAAGCTGCTGGCTTTGGCTTGGACAGTGGCAAGCACGCAGCTACATTAACGAAGGGAGAAGTTGGAGTTTTGCATGGAGCTATGAGCTATCTGCTGCAAGATGATGATGGACAAATAGTTGAGCCTCACTCTATCAGTGCAGGCTTGGACTACCCTGGTGTCGGACCTGAACATAGCTTTTTGAAAGACTTGGGCCGTGCTGAATATCATAGCATCACTGACAATGAAGCATTGGAAGCTTTTAAGAGAGTTTCACGACTTGAAGGCATCATTCCAGCTCTTGAGACATCTCACGCGTTGGCGTATCTAGAGAAAATATGTCCAACCCTTCCTAATGGAACAAAGGTTGTGGTTAACTTCAGCGGCCGAGGTGATAAGGACGTTCACACTGCTATCAAGTACTTGAAGATGTGA 1422 0.4388 MASSITTLNSSRLLPISKEQNYPSSHFHSNLLKVSSFPSRTSSSSYSLSCSVTKDPSSVLPLLDHTKLDNGSVVHQRPDSFGRFGKFGGKYVPETLMHALTELEASFYSLTADEDFQRELAGILKDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKSLGKKRVIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQSLNVFRMRLLGAEVRPVHAGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLIACVGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDNEALEAFKRVSRLEGIIPALETSHALAYLEKICPTLPNGTKVVVNFSGRGDKDVHTAIKYLKM 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00945 473 TIGRFAM trpB: tryptophan synthase, beta subunit 82 470 IPR006654 GO:0004834|GO:0006568
Car05g00945 473 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 4 473 - -
Car05g00945 473 CDD Trp-synth_B 99 466 IPR006654 GO:0004834|GO:0006568
Car05g00945 473 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 161 175 IPR006653 GO:0004834|GO:0006568
Car05g00945 473 Hamap Tryptophan synthase beta chain [trpB]. 77 471 IPR023026 GO:0000162|GO:0004834
Car05g00945 473 Gene3D - 129 464 IPR036052 -
Car05g00945 473 Pfam Pyridoxal-phosphate dependent enzyme 128 458 IPR001926 -
Car05g00945 473 PANTHER TRYPTOPHAN SYNTHASE-RELATED 4 473 - -
Car05g00945 473 PIRSF Trp_syn_beta 70 473 IPR023026 GO:0000162|GO:0004834
Car05g00945 473 Gene3D - 84 286 IPR036052 -
Car05g00945 473 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 78 471 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00945 Car-Chr5 49573019 49577410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00945 K01696 - gmx:100792812 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00945 05 49573019 49577410 Car05g00945 05 49573019 49577410 ECH