Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00843 ATGCACAGATTTTCACATTTCTTAAAAAATCACACTATTTTCCACCTTCCATTGAAAAACCCATTTCCAATTATCCACAAAAAGCAAAATTTCTTCTCTACCACTACCTTCCAGGTAATTTCTTCTCAACCCTCTTTacactcaccaccaacaccaaaccctaatttcaaaaccaccactatcacaaaAAATGACCAATTTGGCCTCATTCACCTTCAATCTAATGCAAACCATTTCAACGATCAAAACAGTGACGACGAATTTACTTCCGATGTAGAAAAAGTTTATAGAATATTACGAAAATACCATTCTAGGGTTCCCAAATTAGAACTCGCTTTGAAAGAATCTGGTGTTGTTGTTAGTTCTGGATTAACCGAACGTGTATTGAATCGTTGTGGTAATTCTGGAAATTTAGCTTATAGGTTTTTTTCTTGGGCTTCTAAGCAATCTGGTTATAGGCATAGTGAGGAAGTTTATAAAGCTATGATTAAGGTTTTGAGTAAAATGCGACAATTCGGCGCTGTTTGGGCGTTAATCGATGAAATGAGGTTGGAAAATCCTCAATTGATTTCGCCGCATGTTTTTGTTATTTTGATGAGGAGGTTCGCTTCAGCTAGAATGGTTCATAAGGCTATTGAGGTTTTGGATGAAATGCCTAAGTATGGTTGTGAGCCTGATGAATATGTTTTTGGGTGTCTTTTGGATGCATTGTGTAAGAATGGTAGTATTAAGGAAGCGGCTTCGCTTTTCGAGGATATGAGGTATAGGTTTCCGCCGACGGTTAAGCATTTTACTTCGTTGTTGTATGGTTGGTGTAAGGAAGGGAAGCTTGTGGAGGCTAAGCATGTGTTGGTGCAAATGAAGGATGCGGGTATTGAGCCGGATATTGTGGTTTTTAACAATTTGCTTGGTGGGTATGCTCAAGGTGGGAAAATGGCGGATGCTTATGATCTTTTGAAAGAGATGAAAAGGAAGGGATGCGAACCGAACGCAGCCTCGTACACTATTTTGATTCAGTCGTTATGCAAACACGAAAAATTGGAGGAGGCGATGCGGATATTTGTTGAGATGCAAAGAAATGATTGTCAGATGGATGTCATAACATATACGACGTTGATAAGTGGGTTTTGCAAGTGGGGAAAAATAAAAAGGGGTTATGAGCTTTTAGATCAGATGATACAAGAAGGACATTCTCCGAATCAGCTGACTTATTTGCATATCATGTTGGCCCATGAAAAGAAGGAAGAATTGGAAGAGTGTATGGAACTTGTGAATGAGATGAAGAAGATTGGTTGTGTTCCTAATCTTAACATCTATAATACCGTCATTAGGTTGGCTTGCAAGTTCGGAGAGGTCAAGCAAGGTGTTCGGCTTTGGAATGAAATGGAAGCAAGTGGACTCAGTCCGGGTACTGACACCTTTGTCGTCATGATTAACGGGTTTCTCGAACAGGACTGTCTTATTGAAGCTTGTGAGTATTTCAAAGAAATGGTTGGGAGAGGGCTTTTTGCTGCTCCTCAATATGGAACTTTGAAGGAGTTGATGAATTCTCTTTTAAGAGCTGAGAAGCTTGAAATGGCTAAAGATACTTGGAATTGTATCACTGCTTCTAAAAGTTGTGAAATGAATGTGGCTGCATGGACAATTTGGATTCATGCACTGTTTTCAAAAGGGCATGTGAAGGAGGCTTGTTCGTTTTGTATAGACATGATGGATAACGATTTAATGCCACAGCCAGATACTTTTGCAAAGCTTATACGCGGTCTGAAGAAATTGTATAACAGAGAATTTGCAGCTGAAATCACTGAGAAGGTAAGGAAAATGGCTGCTGATAGGCATATCACATTCAAGATGTATAAACGGAGAGGAGAAAGGGATTTGAAAGAAAAAGAAAAGGAGAAAAAAGATGGGAGGAAGAGGAGGGCTAGGCAACGCCGTTGGGATGTCATTGGAGTAGTTGCTTCTTTCTTTGAGATTTAA 1980 0.3848 MHRFSHFLKNHTIFHLPLKNPFPIIHKKQNFFSTTTFQVISSQPSLHSPPTPNPNFKTTTITKNDQFGLIHLQSNANHFNDQNSDDEFTSDVEKVYRILRKYHSRVPKLELALKESGVVVSSGLTERVLNRCGNSGNLAYRFFSWASKQSGYRHSEEVYKAMIKVLSKMRQFGAVWALIDEMRLENPQLISPHVFVILMRRFASARMVHKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSIKEAASLFEDMRYRFPPTVKHFTSLLYGWCKEGKLVEAKHVLVQMKDAGIEPDIVVFNNLLGGYAQGGKMADAYDLLKEMKRKGCEPNAASYTILIQSLCKHEKLEEAMRIFVEMQRNDCQMDVITYTTLISGFCKWGKIKRGYELLDQMIQEGHSPNQLTYLHIMLAHEKKEELEECMELVNEMKKIGCVPNLNIYNTVIRLACKFGEVKQGVRLWNEMEASGLSPGTDTFVVMINGFLEQDCLIEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDTWNCITASKSCEMNVAAWTIWIHALFSKGHVKEACSFCIDMMDNDLMPQPDTFAKLIRGLKKLYNREFAAEITEKVRKMAADRHITFKMYKRRGERDLKEKEKEKKDGRKRRARQRRWDVIGVVASFFEI 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00843 659 Coils Coil 620 640 - -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 256 IPR002885 -
Car05g00843 659 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 53 648 - -
Car05g00843 659 Gene3D Tetratricopeptide repeat domain 412 505 IPR011990 GO:0005515
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 264 296 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 473 502 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 438 470 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 297 331 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 228 254 IPR002885 -
Car05g00843 659 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Car05g00843 659 Pfam PPR repeat 158 184 IPR002885 -
Car05g00843 659 Pfam PPR repeat 403 432 IPR002885 -
Car05g00843 659 Pfam PPR repeat 546 573 IPR002885 -
Car05g00843 659 Pfam PPR repeat 264 292 IPR002885 -
Car05g00843 659 Pfam PPR repeat family 294 343 IPR002885 -
Car05g00843 659 Pfam PPR repeat family 434 481 IPR002885 -
Car05g00843 659 Gene3D Tetratricopeptide repeat domain 91 252 IPR011990 GO:0005515
Car05g00843 659 Coils Coil 410 430 - -
Car05g00843 659 Gene3D Tetratricopeptide repeat domain 506 620 IPR011990 GO:0005515
Car05g00843 659 Gene3D Tetratricopeptide repeat domain 253 411 IPR011990 GO:0005515
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Car05g00843 659 Pfam PPR repeat 361 392 IPR002885 -
Car05g00843 659 Pfam PPR repeat 222 254 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Car05g00843 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Car05g00843 659 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 53 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00843 Car-Chr5 45582117 45584361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00843 275 614 Glycosyltransferase AT1G05670 25.806 3.07e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00843 - - var:108334446 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00843 05 45582117 45584361 Car05g00843 05 45582117 45584361 ECH