Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00733 ATGGCGAGCGATGACAATCTAAAGACATGGGTATCAGATAAGTTGATGTCACTACTGGGGTATTCTCAGCCCACACTTGTACAGTACATGATTGGACTATCCAAGCAAGCTACTTCACCAGCTGATTTAATGGGAAAGCTAGTGGAGTTCGGGATTTCAACAACAGACACCCGTGCGTTTGCGGAAGAAATTTTTTCAAGAGTTCCTCGTAGATCGTCCGGCTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGCAATGTTGGCAAGGAAGCAGGGGACTTACACAATTTTGAAAGATGATGACAATATTGACAATGAATATATTGGCGGTGATGATAAATCGTCAATAACTACAGCGTCTACATCTAGAAAGCCAAACAGTCATAAAAAACGTTTCAGGAAGAAAACTGAAGCTCAAGATGATCAAGATGATCAAGACGATGAGGCAAAaaaagaaagggagagacaagtgaagagaagaaCTTCTCCTGATGAAGATAGTGGTTCAGAGTCAGAAGAAGAAAGATTGAAAGATCAAAGAGAGAAGGAGGAATTAGTGCAGCATATGAGAGAGAGAGATGCTGCAGGAACACGAAAGTTGACTGAACAAAAATTAACACGAAAGGAGGAAGAAGAAGCAATTCGAAGATCTAATGCTGCAGAGAACGATGATATTCAAAATTTGAGAAAGTTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAAAAATTAGAAGAACTGAGAGATGATATAGAAGATGAGCAATATTTATTTGAAGGTGTGAAGCTTTCAGAAGTAGAACTTCGTGAGTTAAGGTACAAGAAAGAGATATATGAACTTATAAAAAAGCGGTCGGAGGAGGCTGACAACGTGAATGAGTATAGAATGCCAGAGGCTTATGACCAGGAAGGTGGCGTTAATCAAGAAAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGACACAAATGCTGAGGAAAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGAACATCAAATTGGAAAGGCTGTGCTGAAGTATGGTTCCAAAAATAAAAAACAAGACGCTGACGATTACCAGTTTGTGTTCGAGGACCAAATTGATTTTATCAAAGCATCGGTGATGGATGGTGACAAGTTCGATTATGAGGAGATGGCCGATTCAATTGAAAAGTCCAAAGCAAAGTCAGCACTAGAGGCACTTCAGGAGGAAAGGAAAAAGTTACCCATCTACCATTACCGGGATGAATTGCTCCAAGCTGTACTTGTTATTGTTGGTGAAACTGGTTCTGGAAAGACTACACAAATTCCCCAATATCTTCACGAAGCTGGCTACACAAAACATGGAATGATTGCATGTACTCAGCCACGGCGTGTTGCTGCTATGAGTGTGGCTGCTCGAGTTGCTCAAGAATTGGGTGTTAAACTAGGACACGAGGTTGGGTACTCCATCCGTTTTGAGGATTGCACATCAGAGAAGACTATTCTGAAATATATGACAGATGGAATGTTGCTGAGGGAATTTCTTGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTCTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTTCTCGCTTCCGGCCTGATCTTAAGTTGCTGATATCGAGTGCTACACTTGATGCAGAAAAGTTTAGTACTTACTTTGATTCTGCTCCAATATTCAAAATTCCGGGGAGAAGATATCCGGTTGAAATACATTTTACCAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTCACGGCACTTCAAATCCATGTTACTCAATCTCCTGGAGATATATTGATATTCCTTACTGGTCAGGAAGAAATTGAAACGGCTGAAGAAATCTTGAAGCATCGAACTAGAGGCTTAGGAACCAAAATTGCTGAATTAATTATATGTCCTATATATGCCAACCTACCAACTGAACTACAAGCTAAAATATTTGAACCAACTCCTGAAGGGGCCCGAAAGGTTGTCCTTGCTACCAATATTGCAGAAACATCATTGACAATTGATGGAATCAAGTATGTTATTGATCCAGGTTTTGTTAAGATGAAAAGTTATAATCCAAAGACAGGAATGGAGTCTTTACTAGTGTCTCCCATCTCAAAAGCCTCAGCAATGCAAAGAGCTGGTCGATCTGGAAGAACAGGTCCCGGAAAATGCTTCCGGTTGTATACTGCATACAATTATCAAAATGATTTGGATGATAACACTGTACCTGAAATACAGAGGACTAACCTCACAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTAATAAACTTTGAATTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCCCTGGAGCTTCTATATGCTTTAAGTGCTTTAAATAAGCTCGGTGAGTTAACTAAGGTAGGTAGACGGATGGCAGAGTTCCCAGTTGATCCTATGTTGTCAAAAATGATAGTGGTTTCAGAAAAATACAAATGTTCAGAAGACATCATTTCCATTGCTGCAATGCTTTCTATTGGAAACTCAATATTTTACCGTCCTAAGGATAAACAAGTCCATGCAGACAATGCAAGGCTGAATTTTCATACTGGAAATGTCGGAGACCATATGGCATTGCTAAAGGTCTATAATTCTTGGAAGGAGACCAATTATTCAACACAATGGTGTTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATATTCGTGATCAACTTGCAGGTCTACTAGAGAGGGTTGAGATCGAGCTTACTACAAATCCTGATGATTTAGATGCCATCAAGAAATCTATAACATCTGGATTTTTCCCACACTCTGCAAAATTGCAAAAAAATGGATCATATCGGACTGTTAAACATGCACAGACTGTTCACATACATCCTAGTTCAGGGCTTGCACAGCTTCTTCCAAGATGGGTTGTGTACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGATCACAGAGTTAAAGCCGGAGTGGTTGTTGGAGATAGCCCCTCACTATTACCAGCAGAAGGATGTTGAAGACACGAGCTCCAAGAAAATGCCCCGTGGAGAAGGACGCCCATAG 3138 0.3977 MASDDNLKTWVSDKLMSLLGYSQPTLVQYMIGLSKQATSPADLMGKLVEFGISTTDTRAFAEEIFSRVPRRSSGLNQYQKQEREAAMLARKQGTYTILKDDDNIDNEYIGGDDKSSITTASTSRKPNSHKKRFRKKTEAQDDQDDQDDEAKKERERQVKRRTSPDEDSGSESEEERLKDQREKEELVQHMRERDAAGTRKLTEQKLTRKEEEEAIRRSNAAENDDIQNLRKFSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEVELRELRYKKEIYELIKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKAVLKYGSKNKKQDADDYQFVFEDQIDFIKASVMDGDKFDYEEMADSIEKSKAKSALEALQEERKKLPIYHYRDELLQAVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVAQELGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSTYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTQSPGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPKTGMESLLVSPISKASAMQRAGRSGRTGPGKCFRLYTAYNYQNDLDDNTVPEIQRTNLTNVVLTLKSLGIHDLINFEFMDPPPAEALLKALELLYALSALNKLGELTKVGRRMAEFPVDPMLSKMIVVSEKYKCSEDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTTNPDDLDAIKKSITSGFFPHSAKLQKNGSYRTVKHAQTVHIHPSSGLAQLLPRWVVYHELVLTTKEYMRQITELKPEWLLEIAPHYYQQKDVEDTSSKKMPRGEGRP 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00733 1045 Pfam Helicase associated domain (HA2) 799 873 IPR007502 GO:0004386
Car05g00733 1045 SMART ha2_5 798 890 IPR007502 GO:0004386
Car05g00733 1045 SMART ultradead3 410 589 IPR014001 -
Car05g00733 1045 Pfam Helicase conserved C-terminal domain 609 737 IPR001650 -
Car05g00733 1045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 603 778 IPR001650 -
Car05g00733 1045 Gene3D - 583 758 IPR027417 -
Car05g00733 1045 Gene3D - 372 582 IPR027417 -
Car05g00733 1045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 417 580 IPR014001 -
Car05g00733 1045 PANTHER OS05G0389800 PROTEIN 109 1041 - -
Car05g00733 1045 PANTHER ATP-DEPENDENT RNA HELICASE 109 1041 - -
Car05g00733 1045 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 522 531 IPR002464 -
Car05g00733 1045 Gene3D - 782 940 - -
Car05g00733 1045 Coils Coil 916 936 - -
Car05g00733 1045 Coils Coil 136 156 - -
Car05g00733 1045 MobiDBLite consensus disorder prediction 134 234 - -
Car05g00733 1045 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 947 1024 IPR011709 -
Car05g00733 1045 MobiDBLite consensus disorder prediction 102 234 - -
Car05g00733 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 931 IPR027417 -
Car05g00733 1045 Coils Coil 232 259 - -
Car05g00733 1045 SMART helicmild6 629 737 IPR001650 -
Car05g00733 1045 CDD SF2_C_RHA 584 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00733 Car-Chr5 41484908 41506515 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00733 K12813 - gmx:100809559 1797.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00733 05 41484908 41506515 Car05g00733 05 41484908 41506515 ECH