Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00698 ATGGTGTCGCGCGGGTTTGAACCTACTGTTATCACCTACGGCATTTTATTGAATTGTTGCTGCAACCAAGGTGATTTTAGTAATGCACGCAAGGTGTTTGATGAAATGCTTCAACGAAGAATTGAACCCAATGTGGTGATTTACACTATTCTCATTCGTGTTTTCTGCAATGGAAGTGAAATGGAAGAAGCTGAGAGGATTTTTAAGAGTATGAAGGAATCTGGGGTGGACCCAAATTTGTACACTTATGTTACTCTCATTGATGGGTATTGCAAAATGGGTGATGTGAAACGTGTTTTTGAATTGTATAGTGATATGTTGTGGAATGGTTTGCGTCCTGATGTTGTGACTTTTGCGAATTTGGTAGATGTTTTGTGCAAGGTGGACAATTTGAAGGCAGCGCAAAACTGCTTTGTTTATATGACTAAATTTGGTGTTTTTCCTAATTCGTATGTTTATAATTGTTTGATTGATGGTTACTGTAAAGCAGGGGATTTGGTTGAAGCAATGCAATTGCTAGTTCAAATGGAACGGAATGGAATTTCCGTGGATGTTTTTACGTATAGTATACTGGTTAAGGGTTTCTGCGACTCAGGTAAGTTGGAGGAAGCTAAGGATTTGATTGAGAAGATGGGAAAAGCAGGGATTTTATGTAATACTGTGACTTACAATGTGTTGATTGATGGATACTGTAAAATGGGTTATATGGAGAAGGCTATTGATGTGTGTTCTCAAATGACTGAAAGGAAAATAGAACCCAATGTGATCACATTTTCTACATTGATTGATGGGTTTTGCAAGAAAAGGAACATAAAAGCTGCTATGGGGTTGTATACAGAAATGGTTATCAAAGGTCTTGTGCCTGATGTGGTGACTTACACGGCTTTGATCGACGGGCATTGCAAGGTTGGAAACAACAAAGAGGCTTTTGAACTGCATAAGGAGATGCTGGATGCGGGAGTAACGCCAAATGTGTTCACAGTTAGTTGTTTGATTGATGGACTTTTGAAAGATGGAAGTACTTATGGTGCAATCAAACTTTTCTTGGAGAAAACTGGAGTTGGTTGCCCTGGAGATGTACTGAAGATGGGTGTTATGAGAAATACTTCTGTATATCATGTGTTGTCTAGGGGCTATAAAGAGAATGCATATTTAAAACATGCTCAAATGTGTTCTGAGCATTTAATGGAATATGACATTCAGTGTCCTTAA 1212 0.3845 MVSRGFEPTVITYGILLNCCCNQGDFSNARKVFDEMLQRRIEPNVVIYTILIRVFCNGSEMEEAERIFKSMKESGVDPNLYTYVTLIDGYCKMGDVKRVFELYSDMLWNGLRPDVVTFANLVDVLCKVDNLKAAQNCFVYMTKFGVFPNSYVYNCLIDGYCKAGDLVEAMQLLVQMERNGISVDVFTYSILVKGFCDSGKLEEAKDLIEKMGKAGILCNTVTYNVLIDGYCKMGYMEKAIDVCSQMTERKIEPNVITFSTLIDGFCKKRNIKAAMGLYTEMVIKGLVPDVVTYTALIDGHCKVGNNKEAFELHKEMLDAGVTPNVFTVSCLIDGLLKDGSTYGAIKLFLEKTGVGCPGDVLKMGVMRNTSVYHVLSRGYKENAYLKHAQMCSEHLMEYDIQCP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Car05g00698 403 SUPERFAMILY HCP-like 18 249 - -
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Car05g00698 403 Pfam PPR repeat 116 146 IPR002885 -
Car05g00698 403 PANTHER ATPASE EXPRESSION PROTEIN 3 1 397 - -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 46 79 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 291 325 IPR002885 -
Car05g00698 403 TIGRFAM PPR: pentatricopeptide repeat domain 186 219 IPR002885 -
Car05g00698 403 Pfam PPR repeat 4 36 IPR002885 -
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Car05g00698 403 Pfam PPR repeat family 288 337 IPR002885 -
Car05g00698 403 Pfam PPR repeat family 43 92 IPR002885 -
Car05g00698 403 Pfam PPR repeat family 219 267 IPR002885 -
Car05g00698 403 Pfam PPR repeat family 148 197 IPR002885 -
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Car05g00698 403 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Car05g00698 403 PANTHER OSJNBA0060P14.6 PROTEIN 1 397 - -
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Car05g00698 403 Gene3D Tetratricopeptide repeat domain 108 178 IPR011990 GO:0005515
Car05g00698 403 Gene3D Tetratricopeptide repeat domain 271 401 IPR011990 GO:0005515
Car05g00698 403 Gene3D Tetratricopeptide repeat domain 179 270 IPR011990 GO:0005515
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Car05g00698 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00698 68 397 Glycosyltransferase AT1G05670 24.523 3.11e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00698 - - pvu:PHAVU_009G185600g 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00698 05 38933838 38935265 Car05g00698 05 38933838 38935265 ECH