Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00697 ATGACACATTTGAAACGGTTCAACACTTTGCTTCAAACAAGTGTAAACAAGTTGGTTTATGACCCTATATCCATGTGGCATGGCAAAGCTCAGTTTCACAATTATAACCTTAAACAACCAAAACCAAAACCAAATCAAACCCTTAGAAATTACCTTGAATCCAACAACAACACCGAGGTGCTTCTACTCTTTAGAACCTTCTTAAGAAAAAAATCACCGACTTTCAATTCCATTGATAGCTTTTCTTTCCTTTTTACTCTTAAAGCCTGCATCAAAAAGAAACATTCCTCTATCGAAGGAGAACAATTGCATGGCCTCATCATAAAATTTGGATATGAATCCATAGTTCAACTCCAAACATCCCTTTTGAGAGTGTATGCAGAAGGGGGAAACCTATTTGATGCACACCAAGTGTTTGATGAAATACACTCAAAGAACATTATATGTTGGACATCTTTGATTTGTGCTTATGTTGGAAATTACAGACCTAAGAAAGGTTTGGAATTATTTAGACTGATGCTGATGAACAATGTGGAACCTGATCGAGTCACTGTGACGATTGCTCTCTCGGCTTGTGCTGATACTGGGGGACTCGAAATGGGTGTATGGATTCACGATTTCGTTCAGCGTAAACAAGGGTTGGAGATAGATTTGTGTTTGAATAATGCTCTCATAAATATGTATGCTAAGTGTGGTGATATTGTAAATGCAAGGAAGTTGTTTGATAGCACAAGAAACAAAGATGTTGCTACATGGACTTCTATGATTGTAGGACATGCACTTCATGGTCAAGCACATGAAGCTCTTCAACTTTTCTCAGAAATGAACACAAGGAGGGACAATAATGTTTCCCCGAACGATGTGACGTTCATTGGAGTTTTAATGGCATGCAGCCATGCAGGGTTGGTCGAGGAAGGGAAACGACATTTCAAAAGTATGAGTGAAGATTATGGTATACAACCAAGAGAGTCTCATTTTGGCTGCATGGTTGATATGTTGTGCAGAAACGGGCTTCTGTGA 1020 0.3882 MTHLKRFNTLLQTSVNKLVYDPISMWHGKAQFHNYNLKQPKPKPNQTLRNYLESNNNTEVLLLFRTFLRKKSPTFNSIDSFSFLFTLKACIKKKHSSIEGEQLHGLIIKFGYESIVQLQTSLLRVYAEGGNLFDAHQVFDEIHSKNIICWTSLICAYVGNYRPKKGLELFRLMLMNNVEPDRVTVTIALSACADTGGLEMGVWIHDFVQRKQGLEIDLCLNNALINMYAKCGDIVNARKLFDSTRNKDVATWTSMIVGHALHGQAHEALQLFSEMNTRRDNNVSPNDVTFIGVLMACSHAGLVEEGKRHFKSMSEDYGIQPRESHFGCMVDMLCRNGLL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00697 339 Pfam PPR repeat 222 244 IPR002885 -
Car05g00697 339 PANTHER - 30 143 - -
Car05g00697 339 PANTHER - 116 339 - -
Car05g00697 339 Pfam PPR repeat family 247 297 IPR002885 -
Car05g00697 339 Pfam PPR repeat family 145 193 IPR002885 -
Car05g00697 339 PANTHER - 30 143 - -
Car05g00697 339 PANTHER - 116 339 - -
Car05g00697 339 TIGRFAM PPR: pentatricopeptide repeat domain 120 147 IPR002885 -
Car05g00697 339 TIGRFAM PPR: pentatricopeptide repeat domain 148 181 IPR002885 -
Car05g00697 339 TIGRFAM PPR: pentatricopeptide repeat domain 251 275 IPR002885 -
Car05g00697 339 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 278 IPR002885 -
Car05g00697 339 Gene3D Tetratricopeptide repeat domain 279 339 IPR011990 GO:0005515
Car05g00697 339 Gene3D Tetratricopeptide repeat domain 200 278 IPR011990 GO:0005515
Car05g00697 339 Gene3D Tetratricopeptide repeat domain 64 199 IPR011990 GO:0005515
Car05g00697 339 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00697 Car-Chr5 38931015 38932168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00697 81 339 Glycoside Hydrolase AT3G49170 35.907 1.35e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00697 - - aprc:113851938 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00697 05 38931015 38932168 Car05g00697 05 38931015 38932168 ECH