Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03596 ATGATAGCAAAGGACTTCGACGACGAAGATAAATGGCTCGCCGAAGGGATCGCTTCCATTCAACACAATGCATTCTTCATGCATCGCGCTCTCGACGATAACAATCTCAGAGACTCTCTCAAATTCTCAGCGCAGATGCTATCGGAACTTCGAACTTCTAGGCTATCACCTCATAAATATTATGAACTGTATATGAGAGCCTTTGATGAGCTACGGAGGTTGGAGATGTTCTTCAAAGACGAAAGTAGACACGGTGTTTCCATTGTTGATCTGTATGAGCTTGTTCAACATGCTGGGAATATATTGCCTAGATTGTATCTTCTTTGCACAGTAGGATCCGTTTACCTTAGATGTAAGGATACTCCTGTAAGGGACGTTCTTAAAGACCTAGTGGAAATGTGTCGAGGGATTCAGCATCCGATTCGTGGTCTGTTTTTGAGGAGTTATCTTTCACAAGTCAGTAGAGACAAGTTGCCCGATATTGGCTCTGAATATGAAGAAGGGGATTATGGCACTGTGAAGGATGCAGTTGAATTTGTTCTAGAGAATTTCTCAGAAATGAATAAGCTCTGGGTTCGATTGCAACATCAGGGACCCGGTCGGGTAAGAGAGAAGAAGGATAAAGAAAGGAACGAGCTTCGCGATCTGGTAGGGAAAAACCTCCACGTACTGAGTCAGATAGATGGTGTGGACCTTGAGATGTACAAAGACACTGTCCTTCCAAGTGTTCTAGAGCAGGTTGTCAACTGTAAAGACGAGCTTGCCCAATTTTATCTCATGGAGTGCATAATCCAGGTTTTTCCAGATGAATACCACTTGCAGACACTTGAGACACTCTTAGGTGCTTTCCCCCAATTGCAGCCCACAGTAGACATCAAGACAGTGTTATCTCAGTTAATGGACAGGTTGTCAAATTATGCCGCATCAAGTACTGAAGTATTACCCGAATTTTTGCAAGTGGAAGCATTTACCAAACTAAGCACTGCAATAAGCAGGGTGATAGAAGCACAGGTTGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGATCAAGTACTGGGATCATGTGTCAAGAAGCTGTCTGGAAAACCAAAGCTCGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCCCCACTTGATAAATACAATGATGTTGTGACTGCCCTGACACTTTCCAATTATCCTCGTGTGATGGATCATCTTGATAATGTCACAAATAAAGTCATGGCTCTGGTTATTATCCAAAGCATTATGAAGAATAACACTTACATATCTACTGCTGATAAGGTTGAAGTTTTATTTGAATTAATAAAAGGGCTTATAATAGATTTGGATGGAAGTTCTGAGGAAGAGGTTGATGAAGAAGATTTCAGCGAGGAACAAAACTCTGTTGCTCGCCTCATAAACATGCTTCATAATCATGACCCAGAGGAAATGTTCAAGATAATATGTACTGTAAAGAAACATATTATTAGTGGAGGACCAAGGCGCTTACCTTTCACCGTTCCTTCTCTTATATTTTCTGCACTCAAGTTGATCAGGCAATTGCAAGGCCAAGGTGGAGACGTAGCAGGAGAAGAAGAACCTGCAACCCCCAGAAAAATATTTCAGCTTTTAAACGAGACCATCGAAGCTCTATCCTCTATATCATCTCCTGAACTTGCCCTGAGACTGTATTTGCACTGTGCTGAGGCTGCTAATGACTGTGACATTGAGCCTGTTGCTTATGAATTTTTCACCCAGGCATTTGTACTATATGAAGAAGAAATTGCGGACTCTAAAGCCCAAGTAACTGCAATACATTTAATTATTGGGACTCTCCAGAGAATGAGCATCTTTGGCATTGAGAACAGGGATACATTGACACACAAGGCCACAGGGTACTCTGCAAAGCTTTTGAAGAAACCCGATCAGTGTCGAGCTGTTTATGCATGCTCTCATCTCTTCTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTAAGGATTGCAAATGCTGCTCAGCAAATGGCCAATGTAGCCAGGGGTAGCAGCGGTCCAGTTACACTTTTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAATCCACAGATTACTGGTGCTACTATTCAGGGGCTTATAGAATTAATCAAGACTGAGATGCAGAGTGACTCTGCATCAGCTCTTCCAGCTTCAGATGCTTTCTTTGCTAGCACACTGAGCTTCTTGCTACATCACCTCACAAACACCCAATCCAGTTCCTCTAGCGCTGCTGTGGAAACCAAAAGTGTCATGTATTGCTGGGCAAAATGGGGAGTAACATACATGGACCATGTTTCCATGCAAATCAGTGGTCGAAGCCTAACTTGA 2457 0.4217 MIAKDFDDEDKWLAEGIASIQHNAFFMHRALDDNNLRDSLKFSAQMLSELRTSRLSPHKYYELYMRAFDELRRLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDTPVRDVLKDLVEMCRGIQHPIRGLFLRSYLSQVSRDKLPDIGSEYEEGDYGTVKDAVEFVLENFSEMNKLWVRLQHQGPGRVREKKDKERNELRDLVGKNLHVLSQIDGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGAFPQLQPTVDIKTVLSQLMDRLSNYAASSTEVLPEFLQVEAFTKLSTAISRVIEAQVDMPIVGAIALHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDVVTALTLSNYPRVMDHLDNVTNKVMALVIIQSIMKNNTYISTADKVEVLFELIKGLIIDLDGSSEEEVDEEDFSEEQNSVARLINMLHNHDPEEMFKIICTVKKHIISGGPRRLPFTVPSLIFSALKLIRQLQGQGGDVAGEEEPATPRKIFQLLNETIEALSSISSPELALRLYLHCAEAANDCDIEPVAYEFFTQAFVLYEEEIADSKAQVTAIHLIIGTLQRMSIFGIENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEILNKYIYYFEKGNPQITGATIQGLIELIKTEMQSDSASALPASDAFFASTLSFLLHHLTNTQSSSSSAAVETKSVMYCWAKWGVTYMDHVSMQISGRSLT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03596 818 Gene3D - 467 775 IPR042491 -
Car04g03596 818 PANTHER VACUOLAR SORTING PROTEIN 35 2 772 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car04g03596 818 PIRSF Retromer_Vps35 3 816 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car04g03596 818 SUPERFAMILY ARM repeat 146 779 IPR016024 -
Car04g03596 818 Pfam Vacuolar protein sorting-associated protein 35 12 748 IPR005378 GO:0015031|GO:0030906|GO:0042147
Car04g03596 818 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03596 Car-Chr4 65204768 65215163 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03596 K18468 - gmx:100775573 1378.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03596 04 65204768 65215163 Car04g03596 04 65204768 65215163 ECH