Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03521 ATGAGTTGGAGAACTTTACTTTCTCTTGGCTCTTCAATCAACAAACTCAAATCAATCTCCAATTCTCCTTTTCCATCAATTATCTTCAAACGACATCCCGTTTCATCTCTTACCGGTTACCGGAACTTCCATTCCCATTCCCCCGAACTCAGTAACTCGTTAATCGATCCATCACTCCGAACAACTCACTTAAACGACGATAAGGTCCAACAAAACGACAACGAAGACGAAACCACTAACGAATTCCTCTCCAGATTCGCATGGATAATGCGGAAGAAAGTGAAGGAATCGTATCCCGAATGCGATAAAACCACTGTCGATGGAATGCTTCTTGTTATCGTCGAAAGAGTTGTTTCCGAAATGGAAAAAGGTGCTGGTGCTGGTTCGACGGCGTCGTTTTCCCCTTTTTCTTCGGTGGATTTTAGTGAGGATCTTTGGAGAACGGTTTGGGAGGTTAGTAATAAGGTTTTGGTGGATATGAATAATGAGAGGAAGAAGGAGAAAATGAAGGGTTTTTTGCAGTGTGATGAAGTGAAAGAGATGTGTAGGTTCGCCGGCGAGGTTGGTATTCGAGGCAATTTGCTTAGAGAACTTAGGTTTAAATGGGCACGTGAGAAAATGGAGGAACATGAGTTTTATGAGGGTTTGGAGAAATTGAGGAAAGAGGGACAGGTTGTTGTTGAAGAAGAAACAAAACTTGATGAAACTGAAACAAatgttgatttggaacctgttaatgttgatggtgttgttgaagacaatgttcatgttgaGGAGAAGGGTGAGAATAAGGTTGTTGGGCTTCCCAAGAGGAGAGGGAAGCTGAAGTTTAAGATTTATGGGCTTGATCTATCTGATCCTAAATGGGAACAAGTAGCTGATAGGATTCATGAGGCAGGAGAAGTTCTTTGGCCGAAGGAGGTGAAGCCGATAACTGGGAAATGTAAACAAGTTACCGACAAAATTCTGTCCTTGAAGGAGGAAGATGGAGATGATAGCTTGTTAACATTGTTGGCTGAGTGGGTTGAGCTTCTACAACCTGCTAGGGTTGATTGGATCAATTTGCTTGATAGGTTGAAAAATCAGAATTCTCCTTTGTACTTCAAGGTGGCAGAAATGGTATTGACTGAAGATTCTTTCCAAACAAATATCTCTGACTACTCTCGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACTGAGAGGATGCTTAAGAAGATGAATGACAATGGTATACAACCAGATACTTTGATAGCCAATGTGTTGGTCCACATGTACAGCAAGATAGGTAACATTGAACGTGCAGAAGAAGCATTTAAAGTCTTGAGTAACCTGGGTTTCCAACCTGACGCAAAAGTCTACAACTCAATGATCATGGCCTATATAAATGCTGGTGAACCTACAAAGGGCGAGACACTGATGAGGCAGATGGAGACAAGAGATATTAGGCCCACAAAGGAAATATACATGTCATTGCTCCAATATTATTCTCAACGTGGTGACTTCAATCGTGCCTCACGAACTTCAACAGCTATGCATACTGCAGGGTTCCAGCCGACTTTGGAGACATGCACCTTGCTTATTGAAGCAGCTGCAGTTGCAGGTGACCTAGATAAGGCAAACTCTAATTTTGACTATATGGTTAAACTTGGGCATAAGCCTGATGATCGGTGCATTGCTGCCATGATTCGCACTTATGAGAAGTCAAATTTATTGGACAAGGCATTAAGTCTTCTTTTGACTTCAGAGAAGGATGGGTTTGAGCCTGGGGTTGCAACTTATTCTGTTCTTATGGACTGGATGGCTAAAATGCAGCTTGTTGATGAGGCTGAACAGATTTTAAATAAAATTGCTCTGCTCGGTGAGGCTCCTCCTTTTAGGGTTCAAGTTAGTCTCTGTGATATGTATGCAAGGACTAGAATGGAGAAAAAGGCCCTTCAAACACTGGGTGTTTTGGAAGCTAGAAAGGACGAATTACAACCACATGAGTTTGAAAGGATTATATCCGGCCTTATTGGTGGTGGGTTTTTGCGGGATGCAAAACGAATGTATGGGCTCATGGAGGCACAGGGTTTCACTGCATCTGAACAGCTTAATTCAGCCCTTAGATCTGGCCGCTTACCATTAAGTATGAGGTAG 2148 0.4125 MSWRTLLSLGSSINKLKSISNSPFPSIIFKRHPVSSLTGYRNFHSHSPELSNSLIDPSLRTTHLNDDKVQQNDNEDETTNEFLSRFAWIMRKKVKESYPECDKTTVDGMLLVIVERVVSEMEKGAGAGSTASFSPFSSVDFSEDLWRTVWEVSNKVLVDMNNERKKEKMKGFLQCDEVKEMCRFAGEVGIRGNLLRELRFKWAREKMEEHEFYEGLEKLRKEGQVVVEEETKLDETETNVDLEPVNVDGVVEDNVHVEEKGENKVVGLPKRRGKLKFKIYGLDLSDPKWEQVADRIHEAGEVLWPKEVKPITGKCKQVTDKILSLKEEDGDDSLLTLLAEWVELLQPARVDWINLLDRLKNQNSPLYFKVAEMVLTEDSFQTNISDYSRLIDMYAKENRIDDTERMLKKMNDNGIQPDTLIANVLVHMYSKIGNIERAEEAFKVLSNLGFQPDAKVYNSMIMAYINAGEPTKGETLMRQMETRDIRPTKEIYMSLLQYYSQRGDFNRASRTSTAMHTAGFQPTLETCTLLIEAAAVAGDLDKANSNFDYMVKLGHKPDDRCIAAMIRTYEKSNLLDKALSLLLTSEKDGFEPGVATYSVLMDWMAKMQLVDEAEQILNKIALLGEAPPFRVQVSLCDMYARTRMEKKALQTLGVLEARKDELQPHEFERIISGLIGGGFLRDAKRMYGLMEAQGFTASEQLNSALRSGRLPLSMR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03521 715 Pfam PPR repeat 596 620 IPR002885 -
Car04g03521 715 Pfam Pentatricopeptide repeat domain 515 557 IPR002885 -
Car04g03521 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Car04g03521 715 PANTHER OS07G0661900 PROTEIN 35 708 IPR044657 -
Car04g03521 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Car04g03521 715 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 35 708 - -
Car04g03521 715 Pfam Pentacotripeptide-repeat region of PRORP 395 506 IPR033443 -
Car04g03521 715 TIGRFAM PPR: pentatricopeptide repeat domain 387 419 IPR002885 -
Car04g03521 715 TIGRFAM PPR: pentatricopeptide repeat domain 456 488 IPR002885 -
Car04g03521 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Car04g03521 715 Coils Coil 393 413 - -
Car04g03521 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Car04g03521 715 Gene3D Tetratricopeptide repeat domain 321 484 IPR011990 GO:0005515
Car04g03521 715 Gene3D Tetratricopeptide repeat domain 498 709 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03521 374 710 Glycosyltransferase AT1G05670 22.849 2.00e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03521 - - lang:109358423 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03521 04 64393200 64396838 Car04g03521 04 64393200 64396838 ECH