Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03509 ATGTCGTCGTTTTCTTCAGTCTCTGCTCGTCTCACACTCCTCGCTATCTTCTCCGCTACAACCTTTTATTGTCTCTACAAATCTCGCCGTTTAAGAAACCTCAAACTAAAACTCTCTCTAAACCCTAACCCTAAACCCATTCTCCCTAAGATCCTCTTCATTTCCGAAACTGGCACTTCCAAATCACTCGCTAACCGTCTACATCGTTTCCTCGCTTTAAATGACGTCGCATTTGACCTCATCGATGGCAGAAGCTACGAGCCCGAAGATCTTTCCAAGGAAACGCTCATTCTCATCGTTGCTTCAACATGGGAAGACGGAAAACCTTCTCCCGCTTATAGATTCTTCGCGGATTGGCTTGCAGAGAGCGCTGAAGATTTTAGAGTTGGTTCGTTGCTGCTCTCGCGGTGTAGGTTTGCTGTTTTCGGTGTCGGTAGCCGAGGTTACGGTGAAGCATTCAATGCTGTTGGTAAGGATATTGTTAAACGGATGAAGGCATTGGGTGCTGCTGAGATGATTCCTTTGTGGGAAGGGGATGTTGATGGTGGTGAAGTGGATGAGGTTTTTGATCGTTGGTGCGGGAAGGTGGTTGGATTGTTGAAAGGTGATGGTGGTGGTGATGATCAAAATGGTGATTTGGAGAATGGGGATGAGGAATGTGGTGTTTTGAGTTCTGAAGAGGAGTCTGATTTGGAGGAAGAGGTGGAGGAAGAGATTGTTGATCTTGAAGACATTGCTGGTAAAGCTCCTTCGAGGAAGTCGGGGGCTACTGTGGAGGAGACTAATGGGAAGTTGAATGGGAAGAAAGAAATGGTGACTCCTGTGATTAGGGCAAATTTGGTGAAGCAGGGGTATAAGATTATTGGTTCACATAGTGGTGTCAAGATTTGTAGATGGACCAAGTCACAGCTTCGAGGTCGAGGTGGTTGCTACAAGCATTCATTTTATGGAATCGAGAGTCATAGGTGCATGGAGGCAACTCCTAGCTTGGCATGCGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGCTAAAAGTTGGCAGTGGAAGATGGACGATCCAATAGAGATCGTAAATTCTGCATTAGACCAGCATACAAATATGATTAAGCAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAACTGAAGGCTTCACACCACGACATTGTGCACTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGTTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCGCTGAAGCCTATCACCCAGTTATATGTCAGTGTAGATGCCGGAACAAAGGACTCTTTAAAGGCAATCGATAGACCGCTCTTTGGAGATTTCTGGGAACGATTTATTGATTCCTTGACTGCTCTTAAGGAAAAACATCAGCGTACTGTGTACCGCCTGACCCTTGTAAAAGGATGGAATACTGAAGATGTCGATGCTTATTTTAAGCTCTTTAGTATAGGAGAACCTGATTTTATTGAAATCAAGGGAGTTACATATTGTGGCTCGACTGCTACATCAAAATTGACAATGGAAAATGTCCCTTGGCATGCCGACGTGAAAGCATTCTCAGAGGCTCTGTCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTTCACTCGTGCTGTGTCCTCTTAGCAAAAACTAAAAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGATTATGAGAAATTTCACGACCTGGTGGCTTCTGGAAGTACTTTTGACAGTAAAGATTACATGGCTGCCACCCCATCCTGGGCAATCTATGGAGCTGAGGAAGGTGGATTTGATCCAGCACAATTGCGATTTAGGAAGGAGAGACATCACAAGTCCGGTCGCAAAGAATCAGGTTAG 1941 0.4431 MSSFSSVSARLTLLAIFSATTFYCLYKSRRLRNLKLKLSLNPNPKPILPKILFISETGTSKSLANRLHRFLALNDVAFDLIDGRSYEPEDLSKETLILIVASTWEDGKPSPAYRFFADWLAESAEDFRVGSLLLSRCRFAVFGVGSRGYGEAFNAVGKDIVKRMKALGAAEMIPLWEGDVDGGEVDEVFDRWCGKVVGLLKGDGGGDDQNGDLENGDEECGVLSSEEESDLEEEVEEEIVDLEDIAGKAPSRKSGATVEETNGKLNGKKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWQWKMDDPIEIVNSALDQHTNMIKQMKGVPGVTLERLTEGFTPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNTEDVDAYFKLFSIGEPDFIEIKGVTYCGSTATSKLTMENVPWHADVKAFSEALSLKSQGEYEVACEHVHSCCVLLAKTKKFKIDGQWYTWIDYEKFHDLVASGSTFDSKDYMAATPSWAIYGAEEGGFDPAQLRFRKERHHKSGRKESG 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03509 646 Pfam Radical SAM superfamily 328 507 IPR007197 GO:0003824|GO:0051536
Car04g03509 646 PRINTS Flavodoxin signature 50 63 IPR001094 GO:0010181
Car04g03509 646 PRINTS Flavodoxin signature 98 109 IPR001094 GO:0010181
Car04g03509 646 PRINTS Flavodoxin signature 136 146 IPR001094 GO:0010181
Car04g03509 646 PRINTS Flavodoxin signature 161 180 IPR001094 GO:0010181
Car04g03509 646 Gene3D - 31 209 IPR029039 -
Car04g03509 646 SUPERFAMILY Radical SAM enzymes 329 509 - -
Car04g03509 646 SFLD Radical SAM 267 578 IPR007197 GO:0003824|GO:0051536
Car04g03509 646 SUPERFAMILY Flavoproteins 51 200 IPR029039 -
Car04g03509 646 CDD Radical_SAM 328 528 - -
Car04g03509 646 Pfam Flavodoxin 51 192 IPR008254 GO:0010181
Car04g03509 646 SFLD tRNA wybutosine-synthesizing 267 578 IPR034556 GO:0008033|GO:0051539
Car04g03509 646 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 5 639 - -
Car04g03509 646 ProSiteProfiles Flavodoxin-like domain profile. 49 197 IPR008254 GO:0010181
Car04g03509 646 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 5 639 IPR034556 GO:0008033|GO:0051539
Car04g03509 646 Gene3D Aldolase class I 256 586 IPR013785 -
Car04g03509 646 Pfam Wyosine base formation 511 574 IPR013917 -
Car04g03509 646 ProSiteProfiles Radical SAM core domain profile. 316 559 IPR007197 GO:0003824|GO:0051536
Car04g03509 646 Coils Coil 225 245 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03509 K15449 - gmx:100799430 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03509 04 64291657 64296179 Car04g03509 04 64291657 64296179 ECH