Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03490 ATGTTGGAAGCAATGGAAAGTTCAGTGAATAATGGATTCTCCTCACAGTTTCAGAGCTATGGTGATAGCAGTGAAGAAGAActttcagtgcttccacgtcacaccaaagtggttgtaactggtaacaaCCGCACCAAATCGGTACTCGTTGGTCTTCGTGGTGTTGTTAAGAAAGCTGTTGGTCTTGGAGGCTGGCATTGGCTGGTACTTACTAATGGTATTGAAGTGAAGCTGCAGAGGAATGCTCTTAGTGTGATTGAACCACCTACCGGTAATGAGGTAGACGATGACCTTGAATTTGAAAATACACAGTGGCATGGATCAGATATGGCATCAGATGAGACTCAAAAGTCTCACAAATCAAGGCATAGAATTCATAGATCATTGGGATCATCTCACAAGAGCATCAGCAGGTCCTTCTCTGTTGATTCGCAGTCAAAGGGATCTATTTCTATGCCTCATGGATGGACGAAGGTTGACTTGAGCAAATTGGAAATGTCTGCTTTGTGGAGATATTGGCGACACTTCAATCTGGTGGAtgctgttccaaacccatcgaaagagcagctagtagatgttgttcagaggcATTTCATGTCACAGCAAATGGATGAGTTGCAAGTTATTAGGGGATTTGTCAAAGCTGCGAAGAGGCTTAAGACGACTATGTGCAAATGA 678 0.3687 MLEAMESSVNNGFSSQFQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGNEVDDDLEFENTQWHGSDMASDETQKSHKSRHRIHRSLGSSHKSISRSFSVDSQSKGSISMPHGWTKVDLSKLEMSALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIRGFVKAAKRLKTTMCK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03490 225 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 164 217 IPR025718 GO:0005515
Car04g03490 225 MobiDBLite consensus disorder prediction 127 147 - -
Car04g03490 225 MobiDBLite consensus disorder prediction 132 147 - -
Car04g03490 225 Gene3D - 140 225 IPR038291 -
Car04g03490 225 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 1 225 - -
Car04g03490 225 PANTHER SAP30 1 225 IPR024145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03490 Car-Chr4 64059508 64061763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03490 - - gmx:100809195 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03490 04 64059508 64061763 Car04g03490 04 64059508 64061763 ECH