Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03326 atGGCTGACGAATCCCAATACGAAACAACTCCACCCTCCTTGAAACGCAAGTACGATGAACAACCTCCTCACTCTCGACCCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCATACAACAACGTTCCTCCCCCTTCCACCACCGATTTCGAACTCATCAAACAACGCGCTCAAGAAGTCGCCGCTCGTCTTCTCAGCGGCGCCCCTCCCCCATCAGATATCACCAAACGTCCCAAAATCGATAACGGCGTTTCCTCCCCTTACGATTCCACCGATTTGAAGAATCAATATTCAGCCCCTTCGAGTATACCTTCGTACACGCATCAAGGTTCGAGCAAAAAGATTGAAATCCCTAATGGGAGGGTTGGTGTTATTATTGGAAAAAGTGGAGAAACCATCAAGTACCTTCAGTTACAGTCTGGTGCTAAAATCCAAGTTACTCGTGACATGGATGCTGACCCTAATTCACCTAATAGGTTAGTTGAGCTTACTGGTACTCCTGATGCCATTGCTACTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTTCTGGCCTTGTTACTCGACGAGTGGCTGGACAAGGTGGGTCTGATGAGTTTGTGATGAAGATTCCAAATAACAAGGTTGGCCTCATAATTGGTAAAGGCGGAGAAACAATAAAGAGTATGCAAGCTACAACTGGAGCGAGAATTCAGGTGATTCCTCTTCATCTTCCCCCAGGCGACACATCCACAGAAAGAACATTAAAAATTGAAGGGACATCTGAACAAATTGAATCTGCAAAACAAATTGTTAATTCAGTCATAAGTGGCGAGAATCGTCCTAGAAATCCATCAATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCTCGGGGGCCCTCCAGCTGGGCTCCCCCTGCTGCTCAACAACCTGGATATGGCTATGTACAGCCTGGAGCATACTCTGGTCCGTCGCCCCAGTACAATATGCCTCAGCAACAATATGCTGGCTATCCTCCTCAGTCAGCTGGTGGGTATTCTACCAATTGGGACCAGTCCACTGCAACTACCCAGCAGCAGTCTGCTCATGCGGGGTATGATTATTATAATCAACAGCCTCAGCAACAGCAGAATTCTGGTGGTCCTGCACCTCCAGCTGATGGTACTGCTTATAATTATAGTCAACCACCTTCCTCTGGTTATAACCAATCGGGACAAGGCTATGCTCAGGACAGCTATGGTGTGTATCAACAAGCACCACAATCCGGGTATGGTCAGCCACCATCATATGATCAGCAGCAAGCTTATGGCTCGGCACCAAGTTATGGTTCAGCACAAGAGGGCCAAGCTCCCAACTATGGATCACAAGGGGATTCATCCCAAGCTCCACCTGTCCAACCTTCACAACAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTTCCAACTATCCACCACAAGCTGCTACTCAGCCAGGTTATGGGGTGCCCCCAACCTCCCAAGCTGCTTACGGCAATCAACCTCAATCCGGTTATGGAGCTGGATATGGAGCCCCTCAAGCTCAAAAGCCAAGTGGCACTCCACCTCCATATGGACAATCACAGTCCCCTAATGCAGCAGCAGCAGGTTATGGTCAACCAGGGTATCCTTCTTCCCAGCCCCCACCTTCTGGATATTCCCAATCCGAAACAGGCACTCAAAGAGCACCATCATCTGGTTATGGCGGTGCAGTTCAACCAGGGTATGGTCCTCCATCATATGGTGCTCCAGCAGGCAGTCAAGCCGGTTATGGTCAGGCTCCATCCTCATATAGCAGCAGTTCCTATGGTGCTGGTTATCCTCAGGCCCCAGCATATGCTGCTGATGGTAATGCAAGTGGGAATACTCGTGCTAGCTATGATGCAGCACCTGCACAGGGTAGTGTTGCTAAGTCACCTCAAAGCTGA 1947 0.4936 MADESQYETTPPSLKRKYDEQPPHSRPTGFSDGPPPPSYNNVPPPSTTDFELIKQRAQEVAARLLSGAPPPSDITKRPKIDNGVSSPYDSTDLKNQYSAPSSIPSYTHQGSSKKIEIPNGRVGVIIGKSGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTPDAIATAEKLINEVLAEAESGGSGLVTRRVAGQGGSDEFVMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQIVNSVISGENRPRNPSMSGGYSQQGYQARGPSSWAPPAAQQPGYGYVQPGAYSGPSPQYNMPQQQYAGYPPQSAGGYSTNWDQSTATTQQQSAHAGYDYYNQQPQQQQNSGGPAPPADGTAYNYSQPPSSGYNQSGQGYAQDSYGVYQQAPQSGYGQPPSYDQQQAYGSAPSYGSAQEGQAPNYGSQGDSSQAPPVQPSQQGYGSSQQPSPNASNYPPQAATQPGYGVPPTSQAAYGNQPQSGYGAGYGAPQAQKPSGTPPPYGQSQSPNAAAAGYGQPGYPSSQPPPSGYSQSETGTQRAPSSGYGGAVQPGYGPPSYGAPAGSQAGYGQAPSSYSSSSYGAGYPQAPAYAADGNASGNTRASYDAAPAQGSVAKSPQS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03326 648 CDD KH-I 112 177 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 527 541 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 84 112 - -
Car04g03326 648 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 57 640 - -
Car04g03326 648 Pfam KH domain 206 271 IPR004088 GO:0003723
Car04g03326 648 Pfam KH domain 113 179 IPR004088 GO:0003723
Car04g03326 648 MobiDBLite consensus disorder prediction 1 112 - -
Car04g03326 648 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 57 640 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 555 573 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 596 612 - -
Car04g03326 648 ProSiteProfiles Type-1 KH domain profile. 110 177 - -
Car04g03326 648 SMART kh_6 109 182 IPR004087 GO:0003676
Car04g03326 648 SMART kh_6 201 275 IPR004087 GO:0003676
Car04g03326 648 MobiDBLite consensus disorder prediction 28 43 - -
Car04g03326 648 CDD KH-I 204 270 - -
Car04g03326 648 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 113 189 IPR036612 GO:0003723
Car04g03326 648 MobiDBLite consensus disorder prediction 390 508 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 275 648 - -
Car04g03326 648 Gene3D K Homology domain, type 1 200 300 IPR036612 GO:0003723
Car04g03326 648 Gene3D K Homology domain, type 1 105 199 IPR036612 GO:0003723
Car04g03326 648 MobiDBLite consensus disorder prediction 625 648 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 321 382 - -
Car04g03326 648 MobiDBLite consensus disorder prediction 275 298 - -
Car04g03326 648 ProSiteProfiles Type-1 KH domain profile. 202 270 - -
Car04g03326 648 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 205 277 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03326 Car-Chr4 61712620 61718268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03326 K13210 - gmx:100813135 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03326 04 61712620 61718268 Car04g03326 04 61712620 61718268 ECH