Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03317 ATGCCCACGGATTCCCCTGGTGGTTCAAGTACAACAATAGGGGAATGTATTTATGCGGCGTTGATGCCACTCATAGCTGTCGTCGAGGTTCTGGTTTTTGCTGTCGCAGGTTGTTTCAATTCTCATCCTCCACTCTCCATTTTTCGCAATCGCAAATCTGCTTATACATCTAATGACTTCGCGCGCCTTGCTGAAGAAACCAGATTTACTGTTAATGAAGTGGAGGCATTGCATGAGCTGTTTAAAAAGATAAGTAGCTCCGTGATTGATGATGGCTTGATTCACAAGGTTTTTGATATTTTTGATGAGAAGAGAAATGGTGTTATCGAGTTTGACGAATTCGTCCATGCGCTCGGTGTTTTCCATCCTTATGCCCCTATGGATGAAAAAATAGATTTTGCATTTAAGCTCTATGACCTGCGACAAACCGGATTTATTGAGCCAGAAGAAGTCAAGCAAATGGTAATAGCTATTTTGATGGAATCTGAAATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCAGATGCTGATCAGGACAACGACGGAAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAATCGAAATCCATCTCTCTTGAAGAACATGACACTTCCTTATTTGAAGGATATCACAACTGCGTTTCCTAGTTTTATTTTCAAATCAGAGGCTGAACTTTGA 699 0.4006 MPTDSPGGSSTTIGECIYAALMPLIAVVEVLVFAVAGCFNSHPPLSIFRNRKSAYTSNDFARLAEETRFTVNEVEALHELFKKISSSVIDDGLIHKVFDIFDEKRNGVIEFDEFVHALGVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESEMNLSDDLLEAIVDKTIADADQDNDGKISKEDWKAFVNRNPSLLKNMTLPYLKDITTAFPSFIFKSEAEL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03317 232 CDD EFh 94 155 IPR002048 GO:0005509
Car04g03317 232 PANTHER CALCINEURIN B-LIKE PROTEIN 10 7 96 - -
Car04g03317 232 PANTHER CALCINEURIN B-LIKE PROTEIN 10 96 231 - -
Car04g03317 232 Gene3D - 59 232 - -
Car04g03317 232 Pfam EF-hand domain pair 129 197 IPR002048 GO:0005509
Car04g03317 232 CDD EFh 130 199 IPR002048 GO:0005509
Car04g03317 232 Pfam EF-hand domain pair 81 115 IPR002048 GO:0005509
Car04g03317 232 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
Car04g03317 232 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Car04g03317 232 ProSitePatterns EF-hand calcium-binding domain. 183 195 IPR018247 -
Car04g03317 232 PRINTS Recoverin family signature 97 118 - -
Car04g03317 232 PRINTS Recoverin family signature 144 162 - -
Car04g03317 232 PRINTS Recoverin family signature 190 210 - -
Car04g03317 232 PANTHER CALCINEURIN B 7 96 IPR045198 GO:0005509|GO:0019722|GO:0019900
Car04g03317 232 PANTHER CALCINEURIN B 96 231 IPR045198 GO:0005509|GO:0019722|GO:0019900
Car04g03317 232 SUPERFAMILY EF-hand 61 224 IPR011992 -
Car04g03317 232 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Car04g03317 232 SMART efh_1 174 202 IPR002048 GO:0005509
Car04g03317 232 SMART efh_1 130 158 IPR002048 GO:0005509
Car04g03317 232 SMART efh_1 93 121 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03317 Car-Chr4 61635645 61642012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03317 63 231 EF-hand Containing Proteins AT4G26570 58.031 2.24e-75 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03317 K06268 - gmx:100810494 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03317 04 61635645 61642012 Car04g03317 04 61635645 61642012 ECH