Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03221 ATGTTTCAAAGAAACCCTTGTTCATACACAAACCCAGAACCTTGTCAGCATCTTTCTGATTACAAGCTCAAACATGGTTTCAATGGCTACAAAGCTATTCAAAAACTACTTGTTACTTCTCCAATTGGGAAAACTAGTTTGAAAAAACCTAATTTGACAATACCTAGATGCAGTTTTTGTAATGGGTGTGAAAAAAGGTGTTTTTTTTGTTTGATTTGTTCTTCATTCTCTTGTTTGGATCATACCCTTTTGCATGCACAAAATGAAATTGGTCATGCTTTGTTTGTGGATGTTGAAAGGGCTGAACTTTTTTGTGGGTTGTGTTGTGATCAATTGTATGATCCTGATTTTGATCAAGTTGTGATGGCTAAACATTCAATGGTTTTGCCACAAGGTGCTATTGGAAATGAGAGTATTGGTCAGAGATTGATCAAGAGAAGGAGATTGGTTTCTGGGGTTGGATTGTATTTGCATAATAAATCTAATAAGTTTAGGTTTTCAACCGAAGATCTTAGGGGTAAATCTTGTTATCCTTTGGGATTGAGGGGTTTGAACAATTTGGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGCTACATGCACCTCCTTTTAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTTCGAGACGAACTACGGGTCAGCTGTGTTTGCTTTGTGATATCAATGCTGTTTTTTCGGCTGTGTATTCGGGTGATCGAAATCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCGGCTAATTTAGCGAGTTACGAGCAGCAGGATGCTCACGAGTTTTTCATTTCATTGTTAGACGCAATCCATGAAAAAGAGGGCAAACCAAGGAACGGAAACAAAGGTAATGGAGAGTGTCACTGCATTGCTCATAGAGTGTTCTATGGACTACTGAGATCAGACGTTACCTGTATAGCTTGTGGATTCACCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAACCTAGACATCAATATCTCTTTGACAGAAAAGGGTAAAAAACATGCCAAACCGAACGAGAACGAAAGCATGTCCACACTTTTGGGTTGTTTGGATTTGTTCACTCGGCCGGAGAAATTGGGGCCGGACCAGAAACTTTACTGCCAAAATTGTAAGGAAAAGCAGAACTCATTGAAACAAATGTCTATTAGAAAGCTCCCTTTGGTACTTACTTTGCACGTAAAACGTTTTGAGCATTCTTTTGTGAAGAAGTTGTCAAGAAAGATTGATCGATACCTACAATTTCCATTCTCCTTGGACATGACTCCATATTTGTCCTCCTCTATCCTTAGAGCCAGATATGGAAATAGGATGTTTGCTTTTGAAGGCGACGATGAATCAGATATGTTTTCCAAGTTCGAGATTTTTGCAGTGGTGACACATTCAGGAACGCTCGAGTCTGGCCATTATGTTTTGTTTGTACGATTAAGGAAGCAATGGTACAGATGCGAAGATGCTTGGATAACGGAGGTTGATGAGGCAACAGTCAGAGCTTCACAATGTTATATGATCTTCTATGTGCAAAAGACTTTGTACAATAAAGCAAATGAAGATCCGAGTCACCCTCCGAATTCGGCTGAAAGAGAGTTATTTATTCCTATTGCTGGCTGTTGCTAG 1668 0.3951 MFQRNPCSYTNPEPCQHLSDYKLKHGFNGYKAIQKLLVTSPIGKTSLKKPNLTIPRCSFCNGCEKRCFFCLICSSFSCLDHTLLHAQNEIGHALFVDVERAELFCGLCCDQLYDPDFDQVVMAKHSMVLPQGAIGNESIGQRLIKRRRLVSGVGLYLHNKSNKFRFSTEDLRGKSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCSRRTTGQLCLLCDINAVFSAVYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISLLDAIHEKEGKPRNGNKGNGECHCIAHRVFYGLLRSDVTCIACGFTSTTYDPFLDISLNLDINISLTEKGKKHAKPNENESMSTLLGCLDLFTRPEKLGPDQKLYCQNCKEKQNSLKQMSIRKLPLVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRMFAFEGDDESDMFSKFEIFAVVTHSGTLESGHYVLFVRLRKQWYRCEDAWITEVDEATVRASQCYMIFYVQKTLYNKANEDPSHPPNSAERELFIPIAGCC 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03221 555 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 526 IPR028889 -
Car04g03221 555 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 116 IPR001607 GO:0008270
Car04g03221 555 Pfam Ubiquitin carboxyl-terminal hydrolase 183 523 IPR001394 GO:0004843|GO:0016579
Car04g03221 555 SUPERFAMILY RING/U-box 14 119 - -
Car04g03221 555 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 551 - -
Car04g03221 555 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 7 551 - -
Car04g03221 555 CDD Peptidase_C19D 182 524 - -
Car04g03221 555 ProSiteProfiles Zinc finger UBP-type profile. 28 131 IPR001607 GO:0008270
Car04g03221 555 SUPERFAMILY Cysteine proteinases 178 525 IPR038765 -
Car04g03221 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Car04g03221 555 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
Car04g03221 555 Gene3D Cysteine proteinases 177 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03221 Car-Chr4 60624585 60628275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03221 183 523 Miscellaneous Gene Families AT2G24640 30.337 7.40e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03221 K11366 - gmx:100806347 939.488