Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03216 ATGGCGGTCCAAAAAATTCTAATCACACCAATTTTGATTTTTCTAATAACCCATTTCGCTAAATCATCATCTTTTGAAAACCAATATTTAAACCGTGGTGTTAGATCAGCATATTGGCCTTCAGGTGATGATTTATCACCTTCTTCAATTAACACAAGTTACTTCACTCACATCTTATACGCTTTCATTCAACCCGAACCAATTTCCTACAACCTTAAAATCACCAAATCCGACAAAAAATATGTCTCACAATTCATCAAAGGGCTCCGCTATCGTAACCCGCGGGTGAAAACTCTTTTATCAATTGGAGGAGGTGGCAGCAATTCAACACTCTTTTCCGAAATCGCAAGCCAAAAACAAAACCGAGAAATCTTCATAAATTCAACAATCCACGTGGCACGAAAATATAGGTTCGATGGTGTTGACTTGGATTGGGAGTTTCCAAAAGATGAAAAAGACATGTTTAACCTTGGTTTGTTATACGAGGAATGGTATAATGCTTTGGTTGCCGAAGCTAAGGTTCGGAGAAAATCCCGTTTACTTTTAACTTCCGCTGTTTACTATAATTCCACAATAAGGCTTATCGGTAATGGGCCGAGATCATATCCGGCCCAAGAAATTAAAAAATATTTGGATTGGGCTAGCCCAATGTGTTTCGATTATCACGGTGCATGGGCTAATAACACAGGCTTCAACGCTGCTTTATATGACCCACAATCTGAAATTAATACGCATTTCGGAATCGGGTCATGGATCAAATGGGGTGTGCCGCCCGAAAAATTGGTTATGGGTTTGGCTTTATATGGAAGAACATGGGAGTTAAAGGACCCAAATGTTAATGGGGTTGGAGCTGAAGCGGTGGGGCCCGCAACTGATACAGATGGTAGCATGAACTATGATGAAATCTTGAAGTTTAATAAAGAGAATGGTGCTAATGTTGTGTATGATGAGGTTGCTGTTTCTTTTTATTCTTATGCGGGTATTACTTGGATTGGGTATGATGATGGACCATCAATAACGACTAAGGTTGGGTTTGCTAAGTCATTGGGCTTGCAGGGCTATTTCTTTTGGGCTCTTGGGAAGGATAAGGATTGGAGTGTCACAAGTCAAGCTTCAAATGCATGGGGACAATGA 1134 0.4021 MAVQKILITPILIFLITHFAKSSSFENQYLNRGVRSAYWPSGDDLSPSSINTSYFTHILYAFIQPEPISYNLKITKSDKKYVSQFIKGLRYRNPRVKTLLSIGGGGSNSTLFSEIASQKQNREIFINSTIHVARKYRFDGVDLDWEFPKDEKDMFNLGLLYEEWYNALVAEAKVRRKSRLLLTSAVYYNSTIRLIGNGPRSYPAQEIKKYLDWASPMCFDYHGAWANNTGFNAALYDPQSEINTHFGIGSWIKWGVPPEKLVMGLALYGRTWELKDPNVNGVGAEAVGPATDTDGSMNYDEILKFNKENGANVVYDEVAVSFYSYAGITWIGYDDGPSITTKVGFAKSLGLQGYFFWALGKDKDWSVTSQASNAWGQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03216 377 Pfam Glycosyl hydrolases family 18 38 362 IPR001223 GO:0005975
Car04g03216 377 PANTHER CLASS V CHITINASE CHIT5A 25 376 - -
Car04g03216 377 SMART 2g34 33 362 IPR011583 GO:0008061
Car04g03216 377 Gene3D Glycosidases 48 363 - -
Car04g03216 377 Gene3D - 267 333 IPR029070 -
Car04g03216 377 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 138 146 IPR001579 GO:0004553|GO:0005975
Car04g03216 377 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 33 377 IPR001223 GO:0005975
Car04g03216 377 PANTHER CHITINASE 25 376 - -
Car04g03216 377 SUPERFAMILY (Trans)glycosidases 37 364 IPR017853 -
Car04g03216 377 SUPERFAMILY Chitinase insertion domain 268 333 IPR029070 -
Car04g03216 377 CDD GH18_plant_chitinase_class_V 34 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03216 Car-Chr4 60546849 60549186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03216 12 375 Glycoside Hydrolase AT4G19810 39.071 9.79e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03216 K01183 - gmx:100787511 543.888