Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03195 ATGTCTAATTTCACAGAAGAACTTGTTTTCTCAGTGTTACAATATTTTGACGAGGAAGCTTTTACGGAAACCGCACACACGCTTGGACGTGAAAGTGGTTTGTACTTTGACTTGAAGTATTTTGAGGATTTGGTACTTAAAGGCAATTGGGATGAAGTTGAGAAGTATCTTTCTGGCTTCACAAAAGTTGAAGACAATAATCACTCAATCAAAATATACTTTGAAATAAGAAAACAAAAATACCTTGAGGCATTGGACAGCAATGATCGTATTAAGGCTTTAGATATCCTTATGAAGGATTTAAAAGTCTTTGGCTCAAGGAATGAAGAACTAATTAAAGAGTTGACTCACCTTTTGACGTTTAACAATATAAGAGAACATAAATCACTTTCAACATATCAAGATGCAAATTCTGCGAGGAAGAAAGTGATGGATGAAATTAGGAAAGTGATAGAACAACATCCTATGTTAGATCAAAAATTGAAATTCCCTGCCATTAAACGTCAGAGACTAAGGCATCTTCTTCAAAATGAAAGAATAAATGGGCAGCatcaaaatcaaattcaaaatcaaaatcaaattcaaattcaaaatcCTGTTATAGGGACTGCTCCTGCACAACATGGTAACTTAATAAATCATGTGGATCATTCAATACCATCTACTTCTACTGCAACAAATCCAAATTCAGAATTGGATTTGAATAATCATGGGATTCCTAATGAAATAATCAAAGAAAGATCTCCTGTGACTTTTAATGAGAGTGGCTGCTTAAAAACTTTGGAGGACATGAAACTTGATTCAATTGAAAAATCCCACAAATTATCAAAGTCTATACCTCATATTTTAAAACCATCTGAATGCCAGTTATTGCTACTCCCTACTCATTCTGAACAAAATAAGATTGTTAGACTTGCTTACACCAATGCTGGAAATGGAATTTTGGCATTGACATCAAATGCTACTCATCTactttggttatggccacatactagccatgatttgaaTGCTAAGGCAACAACACAAGTTTCTCCTCAATTGTGGCATCCAAGAAATGGTTTGCAATTTATGAGCAATGACCTTACAATGGCCAAATCTAGAGATTTAGTTTCTTGCTTTACTATATCAAAAAAGGATTCATATCTCATATCAACATCAGGGGGGATGATTTCTTTGTTCAATATGATCACATTTAAGAATCTAGCGAATTTCTTGCCGCCGCCACCAATGGTAACAAGTCTTGTCTTCTACCCTGAAGATAACAACATACTTCTTGTTGGTTTGGATGATTCCACCATACTTATATACCATATTCAAAAATATGAGGTTCAAAACAAGCTTGAGGGCCATTCAAAACGAGTTACTGCTCTTGCATTTTCAAATACTTTGAATGTTCTTGTTTCTATTGATGCAGATGCTCAGGTTATTGTATGGAATAGCACTAATTGGAAAAAATTGAGAGATAGGAACTTGCAAATACATGGACAAAATGTGCCACAAATATCATCTGAAATTCAAATTCAATTTCACCCTGATCAACAAAAATTTCTTGTTGTACATAATTCTCATCTTGGAATATATGAAGCAACAGAACTAAAATGTGTCAACCAGTGGAATCCAGATGTTTCACAAGTAATCTCCCAAGCAACATTTTCATGTGATGGTCAAATGGTGTATGCTAGTTTTGTTGATGGGACTTTGGCAATATTTGATTCATCAAATTTTCAAATGAAATGTATAATTCATTCTTCTATTTACCTTTCATCAATTTTCAGTGCGAAAATCTACCCAACATATATAGCTGCACATCCAAAGAAACCAAACCAATTTGCAGCAGGATTCACAGATGGTAGTGTTTATGTGTTTGAGCCTAAAGAAGAATGTGGTAATTGGATCATGTCTCAAGTTGATAACGAACCAACTAACACCATTGCAAATGGATCAATTAAGGTTGAGATGGATTAA 1965 0.3313 MSNFTEELVFSVLQYFDEEAFTETAHTLGRESGLYFDLKYFEDLVLKGNWDEVEKYLSGFTKVEDNNHSIKIYFEIRKQKYLEALDSNDRIKALDILMKDLKVFGSRNEELIKELTHLLTFNNIREHKSLSTYQDANSARKKVMDEIRKVIEQHPMLDQKLKFPAIKRQRLRHLLQNERINGQHQNQIQNQNQIQIQNPVIGTAPAQHGNLINHVDHSIPSTSTATNPNSELDLNNHGIPNEIIKERSPVTFNESGCLKTLEDMKLDSIEKSHKLSKSIPHILKPSECQLLLLPTHSEQNKIVRLAYTNAGNGILALTSNATHLLWLWPHTSHDLNAKATTQVSPQLWHPRNGLQFMSNDLTMAKSRDLVSCFTISKKDSYLISTSGGMISLFNMITFKNLANFLPPPPMVTSLVFYPEDNNILLVGLDDSTILIYHIQKYEVQNKLEGHSKRVTALAFSNTLNVLVSIDADAQVIVWNSTNWKKLRDRNLQIHGQNVPQISSEIQIQFHPDQQKFLVVHNSHLGIYEATELKCVNQWNPDVSQVISQATFSCDGQMVYASFVDGTLAIFDSSNFQMKCIIHSSIYLSSIFSAKIYPTYIAAHPKKPNQFAAGFTDGSVYVFEPKEECGNWIMSQVDNEPTNTIANGSIKVEMD 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03195 654 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 645 IPR027728 GO:0006355
Car04g03195 654 PANTHER TOPLESS-LIKE PROTEIN 1 645 - -
Car04g03195 654 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Car04g03195 654 Pfam WD domain, G-beta repeat 444 479 IPR001680 GO:0005515
Car04g03195 654 SMART ctlh 34 92 IPR006595 -
Car04g03195 654 SMART WD40_4 357 394 IPR001680 GO:0005515
Car04g03195 654 SMART WD40_4 440 479 IPR001680 GO:0005515
Car04g03195 654 SMART WD40_4 572 623 IPR001680 GO:0005515
Car04g03195 654 SMART WD40_4 531 571 IPR001680 GO:0005515
Car04g03195 654 SMART WD40_4 397 437 IPR001680 GO:0005515
Car04g03195 654 SMART Lish 4 36 IPR006594 GO:0005515
Car04g03195 654 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 488 IPR001680 GO:0005515
Car04g03195 654 Gene3D - 355 646 IPR015943 GO:0005515
Car04g03195 654 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Car04g03195 654 Coils Coil 133 153 - -
Car04g03195 654 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 479 - -
Car04g03195 654 SUPERFAMILY WD40 repeat-like 362 625 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03195 Car-Chr4 60307355 60312472 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03195 - - cam:101499588 1239.17