Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03175 ATGATAAAATCCAAGTTACTATCAACAATCCAACTCCCCTCAAACACCCCAAAATCAAGACTAGCAGAACAAACCTGCTTAACACTCCTTCACTCTTCCCACTGCAACACATTCACCAAACTAACTCAAATTCAAACCTTCATTCTCAAACATGGCCTCCAAAACAACCCATTAATCCTCACCAAATTCGCTTCCACTTCCTCCAACATAAACGCCATTCACTACGCTTCTTCATTTTTATTCCCATTTGACCAAACTACCCCTACCCAACCACCCTCTTACGATGCCTTCCTCTTCAACACCGTTATCAGAGCTTATGCTCAAACGCACGATTCAAAATCAAAGGCATTGTTCTTTTATAGAACCATGGTTCGTTACGGTGTTTCGCCTAATAAATTCACGTTTCCGTTTGTTCTTAAAGCGTGTGCTGGTGTTGGCAGTTTGAGGTTGGGGAAATTGGTTCATGGATGTGTCGTGAAGTTTGGTTTTGAGGAGGATCTTCATGTTTTCAATACAATGATTCATATGTATTGTTGTTGTTGTGAGGGAGAAGAAGGGGTTGAGATTGCTGAGAAGGTGTTTGATGAAAGTACTAAGTTGGATTCGGTGACGTGGAGTGCTATGATTGGTGGATATGTGCGTTTGGGACGTTCTGCACGTGCTATTGGGTTGTTTAGAGAAATGCAGGTTGTCGGTGTTTTCCCTGATGAGATCACGATGATATCAGTTTTGTCTGCATGTGCTGATTTGGGGGCACTTGAGCTTGGAAAATGGGTGGAATCATACATTGAGAGGGAAAACATTCATAAGTCTGTGGAACTCTGTAACGCTATGATAGACATGTTTGCAAAGTGTGGCAATGTCGACAAAGCCGTCAAACTGTTCAGACAAATGGACTCACGCACCATAGTTTCATGGACTTCAGTAATTGCTGGTCTTGCAATGCACGGTCGCGGGTTAGAGGCTGTTTCAATATTTCATGAAATGGTTAAAAATGGTGTAACACCTGATGATGTTGCTTTCattggggtgctctctgcttgcagtcactcaggacttgttgacaaaggaagacactatttcaattcaatggaaaggaatttcagcattgtgccaaagatagaacattatggatgcatggtggaTTTGTTTTGTAGATGTGGATTTGTCAAAGAAGCATTTGAGTTTGTTCAAAACATGCCTTTTGAACCAAACCAAATCATATGGAGAACCCTAATAACTGCTTGTCATGCAATTGGGGAACTCAAGCTTGGAGAGAGTATCTCTAAAGAGCTAATAAAAAATGAGCCGATGCACGAGTCTAACTATGTTTTGTTGTCGAACATTTACGCGAAATTGCGACGATGGGACAAGAAGACTAAGGTGAGGGAGGTGATGGATATGAGAGGGATGAAGAAGGTTCCGGGGAGTACGATGATTGAGGTAAACAATGAAATGCATGAGTTTGTTGCTGGTGATAAGTCTCATGATCAGTATAAAGAGATATATGAAATGGTGGATGAGATGGGCAAGGAAATCAAAAGGGTAGGGTATGTGCCTACAACATCTCAAGTGTTGCTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATAGACATAGTGAAAAGCTTGCCATAGCTTTTGCTCTTTTGAACACTCCCCCTGGAACATCGATTAGGATTGTGAAGAACTTGCGCATTTGTGAGGATTGTCACTCTGCTACTAAGTTTATATCTAAGGTTTATAATAGAGAAATTGTTGTCAGGGACCGCAATCGCTTCCACCATTTCAAAAATGGTTTGTGCTCTTGTAGAGACTTTTGGTAA 1830 0.3836 MIKSKLLSTIQLPSNTPKSRLAEQTCLTLLHSSHCNTFTKLTQIQTFILKHGLQNNPLILTKFASTSSNINAIHYASSFLFPFDQTTPTQPPSYDAFLFNTVIRAYAQTHDSKSKALFFYRTMVRYGVSPNKFTFPFVLKACAGVGSLRLGKLVHGCVVKFGFEEDLHVFNTMIHMYCCCCEGEEGVEIAEKVFDESTKLDSVTWSAMIGGYVRLGRSARAIGLFREMQVVGVFPDEITMISVLSACADLGALELGKWVESYIERENIHKSVELCNAMIDMFAKCGNVDKAVKLFRQMDSRTIVSWTSVIAGLAMHGRGLEAVSIFHEMVKNGVTPDDVAFIGVLSACSHSGLVDKGRHYFNSMERNFSIVPKIEHYGCMVDLFCRCGFVKEAFEFVQNMPFEPNQIIWRTLITACHAIGELKLGESISKELIKNEPMHESNYVLLSNIYAKLRRWDKKTKVREVMDMRGMKKVPGSTMIEVNNEMHEFVAGDKSHDQYKEIYEMVDEMGKEIKRVGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRICEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03175 609 Pfam E motif 421 481 IPR046848 -
Car04g03175 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 130 IPR002885 -
Car04g03175 609 Pfam PPR repeat family 201 248 IPR002885 -
Car04g03175 609 Pfam PPR repeat family 302 349 IPR002885 -
Car04g03175 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Car04g03175 609 Pfam PPR repeat 376 400 IPR002885 -
Car04g03175 609 Pfam PPR repeat 169 189 IPR002885 -
Car04g03175 609 Pfam PPR repeat 275 301 IPR002885 -
Car04g03175 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 595 - -
Car04g03175 609 PANTHER - 27 595 - -
Car04g03175 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Car04g03175 609 TIGRFAM PPR: pentatricopeptide repeat domain 203 237 IPR002885 -
Car04g03175 609 TIGRFAM PPR: pentatricopeptide repeat domain 274 301 IPR002885 -
Car04g03175 609 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Car04g03175 609 TIGRFAM PPR: pentatricopeptide repeat domain 98 131 IPR002885 -
Car04g03175 609 Pfam DYW family of nucleic acid deaminases 517 609 IPR032867 GO:0008270
Car04g03175 609 Gene3D Tetratricopeptide repeat domain 150 253 IPR011990 GO:0005515
Car04g03175 609 Gene3D Tetratricopeptide repeat domain 349 434 IPR011990 GO:0005515
Car04g03175 609 Gene3D Tetratricopeptide repeat domain 254 348 IPR011990 GO:0005515
Car04g03175 609 Gene3D Tetratricopeptide repeat domain 88 149 IPR011990 GO:0005515
Car04g03175 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Car04g03175 609 Pfam E+ motif 487 513 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03175 Car-Chr4 60026119 60028668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03175 99 609 Glycoside Hydrolase AT3G49170 37.984 5.31e-129 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03175 - - lang:109350726 949.118