Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03162 ATGCGACGCACTACTCCGACTATCCATCTCTTCGCCGCCAACGACGCCGCCTTCTGCACCGTCACAATGTCTTCACGCCCTTATCACCGAGGATATCAGAGAGGATTCTCCAGCCGCTCGTATTCCGGAGGGAGAGACAAGTTCGTTACCGGCGACGAGCACTTACGGCCGGTCAGCGATGCCAATTCAGCACTCCGAGGAGATGAGAGAGGAAACTTTGCGAATCAAACACAGTACCATCAGAATCAAGCTTGCAATCCAAGGCTTCATCATCATCCTCATCCACCGCCATACTACCAGAATCCATCTTACAATCCAAGACTTCATCATCATCCTCCTCCACCGCTTCATTTTCGGCCGTTTACACCTTATGATCACCGGCCTGCATTTCGTCCGCAGCAGAATTTTCGCCCGTGCCCTCCCGACCATCGAGAGTGGGAGAATGCGTTGACGCCGCCACCTCGTCATTGTGAAAGGTTTAAAATCCTGTCCTATAATATATTGGCTGACTACCTTGCTAAGGACCACTGGAAAAAACTTTATTATCACATACCTCCATACATGTTGGACTGGCAGTGGAGAAAGAGGAAAATTATTTTTGAGCTAGGCTTGTGGTCTGCTGATATCATGTGTTTTCAGGAGGTTGATAGATTTCAGGAGTTGGCTGAGGATTTGAAGTTTAAGGGATACAGAGGCACCTGGAAGATGCGTACGGGAAATCCAGTTGATGGCTGTGCAATCTTTTGGCGAACATCAAGGTTCAATTTGTTATATGAAGAATGCATTGAGTTCAACAAGTTGGGACTGAGAGACAATGTCGCTCAAATATGTGTATTAGAGTTCATTAATCGAAATGGATCTCTCCCACCCAGCCTGACAGATTCTCGTAAAGTTGTGGtttgcaacattcatgtgctttacaatccaaatagaggagaaatcaagcttggccagGTCAGAGTCCTATTGGATAAGGCTCAAGCTGTTTCTCAACTCTGGAATCATGCCCCTGTTATTATCTGTGGGGATTTTAATTGTACCCCTAAGAGTCCATTGTACAACTTTATTGCAGAACAAAAGTTAGATCTGTCTGGAATAGATAGGAATAAAGTATCAGGGCAAGCTTCTGCTGTACTTCGCTCCCCATGGATCCATGGTTCTAAATCTAGCGAAAACAGATATTCTAATGGTTCAGTTCAGGCCACATCTGCTGAAGGTGACAAGGAAGTTACTATTGAACAAAATAGTTCTGTGCCAGACATGCAGAATCCGGACACTGAGAATAACAGTTCAGAGAATCAAAATACTCACCCTGTTTTGGATATGCCTGATAAGACAAATGTGCAGTGTAGCAGGCTAAGTGATGATTGTGCAGGAAAAGATACTCAGGAGGCTGTTGGCCATAATAAGATTTTCGGTGAAGTTGATGGCATGAAAGAAGTGCCAAATCCTTCTAATAATAAAGGTAGGCTCCCAATTGATCATATAAATGATGATGAAATTCATGACATCACACCTATGACATCTTCAGATCTTGAAACGGTTCACAATGACCCAACTGGGACGGGAAGCACGGAACATACATCAGATGTTATCTCAACTTCAAATCAAGAACCATTAAGTGTAAAATGCAACTTGCATGATCATAAAGTGAATAAGCATATAGAGTTTGACTGTTCCTCAACCTCTCTTCAAGAAGGTGATCAAGCTTCAAAGGTGAAGATGGATCTTGAGTCAACAGATCTTCTTAAGGTAGAAGTATCTTCAACTAAAACATCCAGTAAGACTTCAGTTTCTGATGCTTTTGAAGTCCCTCATCCAGAATATAGAGAAAGCTCATCTTATGAGGTCATTGCTAATGACCAAATAAATTGCTCAACAACTGCATATCTAGTTGACGGGTCACATGATTCTACCAACATTGACTTTCCATTAAATGAAAAACTAGATAAATTTTCCTTTGATGAGATAGATAAAGTCGATGTAAGCAGTGGGAATATTGGCGAAGATGCCATTGATTTCATAAATGCCTTACATAATGCCGAAGAAGAAAGCAATGAAGTGAAGGACGACTTATCTCCAAGTCTGATTTCCAATTATATTGGTGCCGAGAAAACTACTTATAATCCATCATTGTGGACCTCTGCTGACATAGAAACTGGAACAGGAAATGCAGAGTGCACGTTCTTAGAACACCCTTTACCACTTAGGAGCACATACACTGAAGCTATGGACAGTTCAGGGACTAGAGACCTCTATGGTGAACCCTTGGTAACCAGTTACAACAAGTGCTTCTTGGGCACTGTGGACTATATTTGGCGATCTGAAGGTCTGCAAACAACCAGAGTTCTTGCTCCGATACCTAAACATGTCATGGAAAGTGCACGAGGATACCCAACAAAGAAATGGGGTAGCGATCATATTGCCTTGGTTTCTGAGTTGGCTTTCTTGGAAGATGATACTGCCATCAGCAAGGATGTTGTATAA 2487 0.4182 MRRTTPTIHLFAANDAAFCTVTMSSRPYHRGYQRGFSSRSYSGGRDKFVTGDEHLRPVSDANSALRGDERGNFANQTQYHQNQACNPRLHHHPHPPPYYQNPSYNPRLHHHPPPPLHFRPFTPYDHRPAFRPQQNFRPCPPDHREWENALTPPPRHCERFKILSYNILADYLAKDHWKKLYYHIPPYMLDWQWRKRKIIFELGLWSADIMCFQEVDRFQELAEDLKFKGYRGTWKMRTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLEFINRNGSLPPSLTDSRKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAQAVSQLWNHAPVIICGDFNCTPKSPLYNFIAEQKLDLSGIDRNKVSGQASAVLRSPWIHGSKSSENRYSNGSVQATSAEGDKEVTIEQNSSVPDMQNPDTENNSSENQNTHPVLDMPDKTNVQCSRLSDDCAGKDTQEAVGHNKIFGEVDGMKEVPNPSNNKGRLPIDHINDDEIHDITPMTSSDLETVHNDPTGTGSTEHTSDVISTSNQEPLSVKCNLHDHKVNKHIEFDCSSTSLQEGDQASKVKMDLESTDLLKVEVSSTKTSSKTSVSDAFEVPHPEYRESSSYEVIANDQINCSTTAYLVDGSHDSTNIDFPLNEKLDKFSFDEIDKVDVSSGNIGEDAIDFINALHNAEEESNEVKDDLSPSLISNYIGAEKTTYNPSLWTSADIETGTGNAECTFLEHPLPLRSTYTEAMDSSGTRDLYGEPLVTSYNKCFLGTVDYIWRSEGLQTTRVLAPIPKHVMESARGYPTKKWGSDHIALVSELAFLEDDTAISKDVV 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03162 828 Pfam Endonuclease/Exonuclease/phosphatase family 163 364 IPR005135 GO:0003824
Car04g03162 828 MobiDBLite consensus disorder prediction 49 68 - -
Car04g03162 828 MobiDBLite consensus disorder prediction 510 536 - -
Car04g03162 828 MobiDBLite consensus disorder prediction 386 442 - -
Car04g03162 828 Gene3D Endonuclease/exonuclease/phosphatase 133 450 IPR036691 -
Car04g03162 828 Gene3D Endonuclease/exonuclease/phosphatase 611 826 IPR036691 -
Car04g03162 828 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 34 817 - -
Car04g03162 828 SUPERFAMILY DNase I-like 143 362 IPR036691 -
Car04g03162 828 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03162 Car-Chr4 59877723 59889010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03162 191 359 EF-hand Containing Proteins AT5G54130 25.824 8.75e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03162 - - gmx:100810446 969.533