Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03152 ATGCATTCTGACAACCCTCGTCGCATACTCTTCTCACTTGGTTTATTAAAACCATTACCAAACCCTATTCATTCATTTCCATTCTCCTCATGGCTCTCCCAACCCGGTAACCCACTCATTCACTGGCCATCCCTACCACCCATCCAACCCAAACCCACCCTAAacccaaacccaacacccaaccccaacactccaacacccGACTCCAATTTCTCTCTCATTTCAACTCTCTTCACTAACCCATCCATCTCTCCCGGTTCACAACTCCACGCCCAACTTAACCGAACCGGAATCAAACCGGATTCTCCCCTCCTTCGTGCCGTCTTCGACCACTTCGCATCGTCGCCAAAACTGCTGCATTCGCTTTTCCTATGGGCTGACAAACAACCCGGATTTAAACCCGATCCGACTCTCTTTGACTCCATGGTTAACGCTCTTGCTAAAATCAAGGAGTTTGATTCTGCTTGGACTCTTGTTCTTGATCGTATTCATAGagaagaagaagaaaaagaagaTAAATTGGTTTCTATTGGTACTTTTGCTATCTTGATTCGACGATATGCTCGCGCAGGTATGCACGAGGCTGCTATTAGGACGTTTGAGTTTGCAAAAGATAAGAAGTCAATTGTGGATTCGATGTCAGAAATGAGTTTATTTGGGATTTTGATTGATTCACTTTGCAAAGAAGGGTCTGTAAGGGAAGCTTCAGAGTATTTCCTTAGGAGAAAGGAGACAGACCTGGGTTGGGTTCCTTCGACTCGGGTGTATAACATAATGTTAAATGGGTGGTTTCGAGCGAGGAAACTCAAACATGCTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAAACCGAGTGTTGTGACATATGGTACCCTTGTGGAAGGTTATTGCCGGATGCGCCGTGTTGAAAAGGCGCTTGAGATGGTTGGTGAAATGACCAAAGAAGGAATTGAAGCAAATGCAATTGTATATAACCCAATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCTTTGGGAATGATGGAGCGTTTTCATGTTTTGCAAATAGGTCCTACTCTCTCAACTTACAATTCTTTGGTTAAGGGTTTTTGTAAGGCAGGAGATCTTGAAGGTGCTAGTAAAATTCTTAAAAAGATGATAAGTAGAGGTTTCCTTCCAATCCCCACTACCTACAATTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAATTGAGGAAGGGATGAACCTGTATACCAAGATGATTGAGTCTGGTCATACCCCGGATCGTCTAACTTACCATCTTGTGTTGAAGATGTTATGTGAAGAGGAGAGGTTAGATTTGGCAGTTCAAGTTAGCAAGGAAATGAGACATAATGGATATGACATGGACTTGGCTACGAGTACCATGTTAATTCATTTGCTATGCAAAATGCATAGGTTAGAAGAGGCTTTTGCAGAATTTGAGGACATGATAAGAAGAGGTATAGTTCCTCAGTATTTGACATTCCAAAAATTGAATGTTGAGTTAAAGAAACAAGGTATGACTGAAATGTCTCAAAAACTTTGCCACTTGATGTCGAACGTTCCTCATTCTACAAACTTGCCAAATACTTATGGTGAAGTCAGAGACAATGCACATGCACATAGAAAATCTATTATTCAGAAAGCTCAAGCCGTTTCTGATTTGCTGAAGGACCCCAAGGAGCTTGATAAGTTTAGAAGTTCATCAGAAAATGATGTCTCAATTGCAAACTGTTTGATAGAGGATATTAAGAAAAGGATAGATATAAAATGA 1791 0.3981 MHSDNPRRILFSLGLLKPLPNPIHSFPFSSWLSQPGNPLIHWPSLPPIQPKPTLNPNPTPNPNTPTPDSNFSLISTLFTNPSISPGSQLHAQLNRTGIKPDSPLLRAVFDHFASSPKLLHSLFLWADKQPGFKPDPTLFDSMVNALAKIKEFDSAWTLVLDRIHREEEEKEDKLVSIGTFAILIRRYARAGMHEAAIRTFEFAKDKKSIVDSMSEMSLFGILIDSLCKEGSVREASEYFLRRKETDLGWVPSTRVYNIMLNGWFRARKLKHAERLWEEMKKENVKPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIEANAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKIEEGMNLYTKMIESGHTPDRLTYHLVLKMLCEEERLDLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQKLNVELKKQGMTEMSQKLCHLMSNVPHSTNLPNTYGEVRDNAHAHRKSIIQKAQAVSDLLKDPKELDKFRSSSENDVSIANCLIEDIKKRIDIK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03152 596 MobiDBLite consensus disorder prediction 42 69 - -
Car04g03152 596 Pfam PPR repeat family 395 439 IPR002885 -
Car04g03152 596 Pfam PPR repeat family 251 300 IPR002885 -
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Car04g03152 596 MobiDBLite consensus disorder prediction 42 65 - -
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Car04g03152 596 Gene3D Tetratricopeptide repeat domain 387 565 IPR011990 GO:0005515
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Car04g03152 596 Gene3D Tetratricopeptide repeat domain 240 313 IPR011990 GO:0005515
Car04g03152 596 Gene3D Tetratricopeptide repeat domain 314 386 IPR011990 GO:0005515
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Car04g03152 596 Pfam PPR repeat 465 494 IPR002885 -
Car04g03152 596 Pfam PPR repeat 219 240 IPR002885 -
Car04g03152 596 Pfam PPR repeat 325 348 IPR002885 -
Car04g03152 596 Pfam PPR repeat 179 201 IPR002885 -
Car04g03152 596 PANTHER LEAF PROTEIN-LIKE 82 592 - -
Car04g03152 596 Gene3D Tetratricopeptide repeat domain 113 239 IPR011990 GO:0005515
Car04g03152 596 Pfam PPR repeat 356 384 IPR002885 -
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 324 351 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 255 288 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 467 496 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 430 462 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 360 391 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Car04g03152 596 TIGRFAM PPR: pentatricopeptide repeat domain 395 427 IPR002885 -
Car04g03152 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Car04g03152 596 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 82 592 - -
Car04g03152 596 SUPERFAMILY HCP-like 252 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03152 Car-Chr4 59702043 59704611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03152 75 549 Miscellaneous Gene Families AT4G11690 24.587 1.09e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03152 - - gmx:100793484 847.04