Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03098 ATGCTCCAATCTCACATTTTCTCTTCACTCACTGTTCCACTCCACTCAAAGCCACGTCATCCCTCACACATTTCcttctcttcatttttttcttgttcttgttcttgttcatcttcttttcCAATACGACGCCGTTTGGTCAATCCTCGCAAAACAAATCTCAAGCACCTCACTTCTCGCATAGTTCAACTCACTCGCCGAAAACAGCTTCGCCAGattatGCATGAAATTGAGGTCGCTAAGAAACATTTTGGGAAGTTGAATACGATAGTGATGAATGCGGTCATAGAAGCTTGTGTGCGTTGCGGTGACATCGATTCAGCTCTTAAGATTTTCGAAGAGATGAAAAATCCCGAAGCTTGTGGTGTTGATACTATCACCTATGCTACGCTTTTGAAGGGGTTAGGCAAGGCACGGAGATTTGATGAAGCTTTTCGATTGCTTGAATCTGTCGAAAATGGTACTGCTGCGGGAAGTCCAGAGTTGTCAGCACCATTGGTCTTTGGTTTGCTAAATACCTTAATAGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTTTGTTCTTCGTGAAGGCGGACATTTTTCAGTCTCAGTATACAACCTACTAATAAAGGGGTATATAAACGCAGGCTGTCCTCACACTGCAATAAACATGCACACTGAAATTTTACATCAAGGAATAATGCCTGATAGGCTGACGTATAACACACTACTTTTAGCATGTGTTCAGTGTGAAAAGTTGGATGTTGCCATGCAATTATTTGAGGAAATGAAGGGAAAAGCAAAAGAACTCATCCACCATGATCTGTTTCCAGATATCATTACATACACCACATTGCTCAAGGGTTTTGGGCAGGCAAAGGATCTTGTTTCAGTTGTGCAAATAGTGCTGGAAATGAAATCATGTTCCGAGTTATACATTGATAGAACTGCTTACACTGCAATAGTTGATGCTTTACTAAAATGTGGCTCAGTTAAAGGTGCTCTGTGTATTTTTGGAGAAATACAGAAGCTGGTTGGTCGGAATCCAGAGTTCAGACCAAAGCCTCATCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTCGAGGAGATTATGGTCTAGTTAAAAATTTGCATAAGCGGATTTTGCCAGATACTGCAGGAACTATCTTACCAGTTTCCCAAGAAGAAGCCGACCACCTTCTAATGGAAGCGGCCCTTAACGCTGGCCAGGTTGATGTTGCTATTAAAACTCTTACATATATTGTTTCAAAATGGAAGGGCATATCCTGGACAAGTCATGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTATTGGGATTCTCAATATCTCTATTCAGTCCTTTCTTACTTCCTCAGGTTTCACCTTCTGAACTGGTTGAGGGTTTCATGATACCATTTGAAGCAACACGGCCACTACAAGGTACCATAAAGCTGAAGGATGTGGTAACACGTTTCTATAATGATGCGGTTGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTGTTGCACCGCGAAGACTGCAATCAGTTGGATGCTCCACTTTCAACAATGATGAGAAGCCCTCCTCCCAGAGTTACGACTTCAACATCTGTTGGTCATGTAATAGGGTGTTCAGTTGCAGATAAACCAAATTCTTGTTATAACGAAAGTCCTCAAGAAGAGTAG 1692 0.4149 MLQSHIFSSLTVPLHSKPRHPSHISFSSFFSCSCSCSSSFPIRRRLVNPRKTNLKHLTSRIVQLTRRKQLRQIMHEIEVAKKHFGKLNTIVMNAVIEACVRCGDIDSALKIFEEMKNPEACGVDTITYATLLKGLGKARRFDEAFRLLESVENGTAAGSPELSAPLVFGLLNTLIEAGDLRRANGLLACYGFVLREGGHFSVSVYNLLIKGYINAGCPHTAINMHTEILHQGIMPDRLTYNTLLLACVQCEKLDVAMQLFEEMKGKAKELIHHDLFPDIITYTTLLKGFGQAKDLVSVVQIVLEMKSCSELYIDRTAYTAIVDALLKCGSVKGALCIFGEIQKLVGRNPEFRPKPHLYLSMMRAFAFRGDYGLVKNLHKRILPDTAGTILPVSQEEADHLLMEAALNAGQVDVAIKTLTYIVSKWKGISWTSHGGMVASRIEALLGFSISLFSPFLLPQVSPSELVEGFMIPFEATRPLQGTIKLKDVVTRFYNDAVVPIVDEWGSCTGLLHREDCNQLDAPLSTMMRSPPPRVTTSTSVGHVIGCSVADKPNSCYNESPQEE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03098 563 TIGRFAM PPR: pentatricopeptide repeat domain 92 116 IPR002885 -
Car04g03098 563 TIGRFAM PPR: pentatricopeptide repeat domain 126 150 IPR002885 -
Car04g03098 563 TIGRFAM PPR: pentatricopeptide repeat domain 239 264 IPR002885 -
Car04g03098 563 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Car04g03098 563 TIGRFAM PPR: pentatricopeptide repeat domain 280 308 IPR002885 -
Car04g03098 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Car04g03098 563 Pfam Pentatricopeptide repeat domain 272 306 IPR002885 -
Car04g03098 563 Gene3D Tetratricopeptide repeat domain 50 267 IPR011990 GO:0005515
Car04g03098 563 Pfam PPR repeat 317 343 IPR002885 -
Car04g03098 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 154 IPR002885 -
Car04g03098 563 PANTHER OS09G0431600 PROTEIN 35 551 IPR044781 -
Car04g03098 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 118 IPR002885 -
Car04g03098 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Car04g03098 563 Gene3D Tetratricopeptide repeat domain 268 444 IPR011990 GO:0005515
Car04g03098 563 Pfam PPR repeat family 202 247 IPR002885 -
Car04g03098 563 Pfam PPR repeat family 88 136 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03098 88 382 Glycosyltransferase AT1G05670 24.615 7.31e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03098 - - mtr:MTR_1g009650 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03098 04 59114373 59123088 Car04g03098 04 59114373 59123088 ECH