Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03093 ATGTATGAACCAAAGAACATCCTCATAACAGGGGCTGCTGGATTCATAGCTTCACATGTCACAAAAAGATTAATCAACAAGTATCCAAGCTACAAAATTGTAGCTCTTGACAAGCTAGATTATTGCTCAACATTCAAGAATCTTGAACCATGCACATCATCACAAAAGTTCAAATTCATCAAAGGTGACATAGCTTCAGCTGATATAGTGAATCATCTATTGATAGAAGAAGAAATAGACACAATCATGCATTTTGCTGCTCAAACTCATGTTGACAATTCATTTGGAAACTCAATGGAATTCACATATAACAACATATACGGAACACATGTTCTTCTAGAAGCATGCAGGGCTACAAATTGTGTTAAAAGGTTCATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATTTAGATACTGATATTGGTAACATTGAAACATCTCAACTTTTACCAACAAATCCTTATTCAGCTACAAAAGCAGGTGCTGAAATGTTGGTTATGGCTTATCATAGATCTTATGGTCTTCCAATAATAACATCTAGAGGAAATAATGTTTATGGTCCTAATCAATATCCTGAAAAACTTGTTCCTAAGTTTATTCTTCTAGCTATGAAAGGTGAGAAATTGCCTATTCATGGTGATGGATCAAATGTGAGAAGCTATCTTCATTGTGGTGATGTGGCAGAAGCATTTGATGTTATACTTCATAATGGTGTGATAGGTCAAGTTTATAATGTTGGAACTCAAAAAGAAAGGAGTGTGTCAGATGTAGCTGAAGATATTTGCAAACTATTTAAGTTGGATCCTAAACAAGTTATTGATTTTGTTCAAGATAGGCCTTTTAATGATAAAAGATATTTTTTGGATGATCAAAAGCTTAAGAAGTTAGGTTGGGAGGAGAGAATTAGTTGGGAGGAAGGACTTAAGATGACGATTGATTGGTACAAAAATAACCCTGATTGGTGGGGAGATGTATCGACTGCTTTGAATCCGCATCCGCGTTTCTCAGCGATCAATCTATCTGACGAAGCCCAATGGTCTTTTCAATATGGATACTCAAGGCTTTTGAGGTCGTTTACCGAAGTCGGCCGAAGGGATTCGGGGTTGAAGTTTTTGATATATGGTAAGACTGGTTGGATTGGAGGGTTGTTAGGGAAGATTTGTGATGAGGAGAGGATTTGTTGGGAGTATGGAAGGGGAAGATTACAAGATAGGAGATCAATTGTTGAAGATATTAAAAGGGTTATGCCAACACATGTGTTGAATGCAGCTGGTGTAACTGGAAGGCCTAATGTTGATTGGTGTGAATCACATAAAGTTGAAACAATAAGGACTAATGTTGTAGGGACATTAACTTTGGCTGATGTTTGCAAAGAAAGTGGATTGTATGTGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAGCATCCTTTAGGATCAGGCATTGGATTCAAGGAAGAGGACAAGCCAAATTTCATTGGTTCATATTATTCAAAGACCAAGGCCATGGTGGAGGATCTCCTAAAAGAATATGACAATGTATGCACATTAAGAGTCAGAATGCCAATATCATCAGATCTAAGCAATCCAAGAAACTTCATAACAAAGATTAGTCGTTACAACAAAGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAACTCTTACCTATATCAATTGAGATGGCTAAGAGAAACTTAAAAGGTATATGGAATTTCACAAATCCAGGAGTTATAAGTCATAATGAGATATTAGAATTGTATAAAGAGTATATTGATCCTCAATTTAAATGGGAGAATTTTGATTTGGAGGAACAAGCAAAGGTAATTGTTGCACAAAGGAGCAACAATGAAATGGATGCATCTAAGCTCAAAAATGAGTTCCCTAATTTGTTGTCCATCAAAGATTCTGTTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACATGA 1968 0.3592 MYEPKNILITGAAGFIASHVTKRLINKYPSYKIVALDKLDYCSTFKNLEPCTSSQKFKFIKGDIASADIVNHLLIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRATNCVKRFIHVSTDEVYGETDLDTDIGNIETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHNGVIGQVYNVGTQKERSVSDVAEDICKLFKLDPKQVIDFVQDRPFNDKRYFLDDQKLKKLGWEERISWEEGLKMTIDWYKNNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLLRSFTEVGRRDSGLKFLIYGKTGWIGGLLGKICDEERICWEYGRGRLQDRRSIVEDIKRVMPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKESGLYVMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSYYSKTKAMVEDLLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNEILELYKEYIDPQFKWENFDLEEQAKVIVAQRSNNEMDASKLKNEFPNLLSIKDSVIKFVFEPNKKT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03093 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Car04g03093 655 Pfam NAD dependent epimerase/dehydratase family 401 537 IPR001509 -
Car04g03093 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Car04g03093 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Car04g03093 655 Gene3D - 364 655 - -
Car04g03093 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 369 632 IPR036291 -
Car04g03093 655 Gene3D - 7 311 - -
Car04g03093 655 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 2 653 - -
Car04g03093 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 653 - -
Car04g03093 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 328 IPR036291 -
Car04g03093 655 Gene3D - 198 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03093 Car-Chr4 59041043 59044823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03093 6 317 Miscellaneous Gene Families AT4G00110 26.269 2.38e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03093 K12450 - gmx:100776241 1243.41