Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03092 ATGTCTCGTGTGTATGTGGGTAACCTGGATTCGAGAGTCACGGAGAGAGACCTAGAAGATGAATTCCGTGTTTTCGGTGTTATTCGAAGTGTTTGGGTTGCTCGGAGACCACCTGGTTATGCCTTTATTGACTTTGATGACCGCAGAGATGCACAGGACGCTATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAAgtggcggcggcggcggtggaggtggtgggggtcgtggtcgcggcggcggtggcggtggtggtTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCTCGATTTCGCCGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCCAGACGCCGCAGTGTTTCTCCTCGTGGACGCAGCTACAGCAGGTCACCAGCTCCTTACCGAGGACGTGAGGAGGTGCCATATGCCAATGGAAATGGCATTAGGGAGCGACGCCGAAGCAGAAGTTGA 567 0.4586 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRSGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFARECRNRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPAPYRGREEVPYANGNGIRERRRSRS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03092 188 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 180 - -
Car04g03092 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Car04g03092 188 SMART rrm1_1 3 69 IPR000504 GO:0003723
Car04g03092 188 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Car04g03092 188 SUPERFAMILY Retrovirus zinc finger-like domains 88 116 IPR036875 GO:0003676|GO:0008270
Car04g03092 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Car04g03092 188 Gene3D - 98 154 - -
Car04g03092 188 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Car04g03092 188 MobiDBLite consensus disorder prediction 66 188 - -
Car04g03092 188 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 180 - -
Car04g03092 188 Gene3D - 1 97 IPR012677 -
Car04g03092 188 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Car04g03092 188 CDD RRM_SRSF3_like 3 71 - -
Car04g03092 188 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Car04g03092 188 MobiDBLite consensus disorder prediction 103 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03092 Car-Chr4 59035360 59038581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03092 K12896 - gmx:100790689 231.876