Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03046 ATGATACTTCTTCATAGACACAACTTCCCTCAATTCACCACCATGGAGAAAATGGCTATTATATGCTTTGCTTCAATACCAAATGGAATTTTAGTGCTTCTTGCTTTAACTATTTTCCAAGAAGTGCAAGGAATTGGAGTTAATTATGGCACATTAGGAAACAACCTTCCACCACCATCTCAAGTTGCAAAATTTCTCTTACACTCCACAACAATTAACCAAGTGAGAATCTTTGATGCCAATCCTGAAATCTTACATGCCTTTGCTAATACAGGAATAGAGATAACTATAACAATACCTAATGACCAAATTCCCAACATAACCAATTTAACCTTAGCTCAACAATGGATCAAAACCAATGTTCAACCCTTCATTCCTTCCACCAACATCATAAGAATCTTAGTAGGCAATGAAGTTTTATCAACAGCTAACAAACTTCTTATTAGTACCCTTGTCCCTGCCATGCAAACTCTTCACATTGCACTTATGACATCCTCATTAGACAATCTTATAAAAGTGTCTACACCACATTCTTTGGGTATTTTGTCTAACTCAAGTCCACCATCTAGTGGTAGGTTTAGACAAGGCTATGACACACATATACTCAAACCAATGCTTAGGTTTCTTAAAGATGCAAATTCACCCTTTATGGTTAACCCTTACCCTTTTTTTGCTTGCTCTTCAAGTAACCTAGATTATGTACTTTTCCGTGCAAATTCGGGATTTTTTGATGATAATACAAAATTACTATACACCAATATGTTTGATGCACAACTTGATGCTGTTTATTCGGCAATGAAAATTTTGGGTTTTGAGGATGTTGAGATTGTTATCAGTGAAACGGGTTGGCCCTCAATGGGCGACTCGACCCAAATTGGTACAGACACAAAAAGTGCGTCTGATTACAATGGAAATCTCATAAGACATGTTACTTCTGGGGTTGGAACACCTCTCATGCCTAATCGGACTTTTGATACCTACATTTTTGCTTTGTTTGATGAAAATCTAAAGTTTGGCCCATTATGTGAGAGAAATTTTGGATTGTTTCATCCTAATATGACTCTTGTCTATGATGTCCCAATAATGAGAAACAATGTAGTTGTTACTAACAATCATTCAAAAGCATTATTGTTAATCATGATAGCCTTGAGCTTTTTAATTGGTTCATGGGCTTAA 1176 0.3605 MILLHRHNFPQFTTMEKMAIICFASIPNGILVLLALTIFQEVQGIGVNYGTLGNNLPPPSQVAKFLLHSTTINQVRIFDANPEILHAFANTGIEITITIPNDQIPNITNLTLAQQWIKTNVQPFIPSTNIIRILVGNEVLSTANKLLISTLVPAMQTLHIALMTSSLDNLIKVSTPHSLGILSNSSPPSSGRFRQGYDTHILKPMLRFLKDANSPFMVNPYPFFACSSSNLDYVLFRANSGFFDDNTKLLYTNMFDAQLDAVYSAMKILGFEDVEIVISETGWPSMGDSTQIGTDTKSASDYNGNLIRHVTSGVGTPLMPNRTFDTYIFALFDENLKFGPLCERNFGLFHPNMTLVYDVPIMRNNVVVTNNHSKALLLIMIALSFLIGSWA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03046 391 ProSitePatterns Glycosyl hydrolases family 17 signature. 274 287 IPR000490 GO:0004553|GO:0005975
Car04g03046 391 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 37 367 - -
Car04g03046 391 Gene3D Glycosidases 43 367 - -
Car04g03046 391 Pfam Glycosyl hydrolases family 17 45 359 IPR000490 GO:0004553|GO:0005975
Car04g03046 391 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 37 367 IPR044965 GO:0004553|GO:0005975
Car04g03046 391 SUPERFAMILY (Trans)glycosidases 45 359 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03046 Car-Chr4 58381900 58383674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03046 31 369 Miscellaneous Gene Families AT3G46570 53.801 5.96e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03046 - - ccaj:109788601 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03046 04 58381900 58383674 Car04g03046 04 58381900 58383674 ECH