Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03039 ATGTTATCATCTCATCTTGGACGAGTAATTGAAATTACGCTAATACCCTTTTGGTTGAGATATAATTTCTCACTCCGTTCATTCAGCTTCCAAGTTTCTAGAATCTTCCGCACTCTCTGGCAGTCCTCAACTCCATCTACACCTTCAGAGGATAACAACATATGGGACCCCTCACATTATATCATACAAGACAGAAACCTCCTACGTCCAAGTCTCAAACTCAACTCCATAACCGGTCTTCATGTTCTAGACCTCATCGATAGCGGTTCACTCGAACCGGACCGAACCATTTACAATAAGTTGTTAAAGAGATGCACACAGTTAGGGAAGCTCAAAGAAGGAAAATTAGTGCATACCCATATCCTAAATTCCAAGCTTAAGAATGATTTATTCATTCAAAATTCAATTTTGTTTATGTATGCCAAATGTGGTTGTTTGGAACTTGCCCGCCAAGTGTTCGACGAAATGGGTTTGAAAGATGTGGTGACTTGGACTTCCATGATCACTGGGTATTCGCAGAATGAGTGTGCTAGTAGCGCGCTCGTTCTGTTTCCTGAGATGATCCGTGATGGATCGAGACCGAATGAGTTCACGTTGTCGAGTTTGGTGAAGTGTAGTGGGTTTTTAGGGAGTTGTGTTGATGGGAAACAAATTCATGGTTGTTGTTGGAAGTATGGATTTCAAACGAATGTGTATGTCGGGAGTTCGCTTGTGGATATGTATGCAAGGTGTGGATATTTGAGGGAAGCGCAATTGGTTTTCAATGAGCTTGAGAGTAAGAATGAAGTTTCTTGGAATGCTTTGATATCTGGTTATGCAAGGAAAGGTCAAGGTGAGGAAGCTTTGGCTTTGTTTGTGACGATGCAAAGGGAAGATTATGGAGCAACTGATTTTACTTATTCGGCTCTTTTGTGTTCTTCATCGAGCACAGGGTCTTTGGAGCAAGGTAAATGGCTTCATGCGCATATGATGAAGTCAGGAAGGAAGTTAGTTGGTTACGTGGGGAACACTCTTCTTCACATGTACGCAAAGTCGGGGAACATTTGGGATGCAAAGAAGGTTTTCGATCGGTTAGTTAAGGTTGATGTTGTTTCTTGCAATTCCATGTTGATAGGGTATGCTCAACATGGGTTTGGAAAGGAAGCCGTGGACCTTTTTGAAGAGATGCTGTTGTGGGTCGGGATCGAACCCAACGATATCACATTTCTTTCTGTTCTTACTGCGTGCAGTCACGCTGGACTTTTGGATGAAGGTAAACATTATTTTGAGTTGATGAAGAAGTATGGTATTGAACCGAAAGTCTCACATTACACAACGGTTGTTGATCTGCTTGGTCGAGCCGGTCTTCTTGATCAAGCCAGGAGTTTCATTGAAGAAATGCCTATTGAACCGACAGCAACTATCTGGGGAGCTTTGCTCGGCGCATCTAGGATGCATAAAAATATGGAAATAGGCGCTTACGCCGCCGAAAAGGTTTTAGAGCTTGACCCTTTTTATTCAGGAACACATACATTGCTTTCCAATATTTATGCCTCAGCTGGTAGGTGGAAGGATGTTGCAAAAGTGAGAAAGATGATGAAGGATAGTGGATTGAAGAAGGAACCAGCTTGTAGTTGGGTTGAAATCGAAAATGCTGTCCATGTGTTTGTTGCAAATGACATTGCTCATCCACAGAAAGATAAGGTTCATGAAATGTGGGAGAAGCTAAATCAGAAAATTAAAGAGATAGGTTATGTTCCTGATACTAGTCATGTGCTTCTCTATGTAGATCAACAAGAGAAAGAATTGAATTTGCAGTATCATAGTGAGAAGTTGGCTCTTGCATTTGCACTGTTGAATACATCACAAGGATCAACCATACGAATTATGAAGAATATCAGGGTTTGTGGTGATTGTCACTCAGCAATAAAATATGTGTCTTTGGTTGTGAAGAGGGAAATTATAGTTAGAGATACCAACAGGTTCCATCATTTTCGTGATGGCCTGTGTTCTTGTAGGGACTATTGGTAA 2010 0.4139 MLSSHLGRVIEITLIPFWLRYNFSLRSFSFQVSRIFRTLWQSSTPSTPSEDNNIWDPSHYIIQDRNLLRPSLKLNSITGLHVLDLIDSGSLEPDRTIYNKLLKRCTQLGKLKEGKLVHTHILNSKLKNDLFIQNSILFMYAKCGCLELARQVFDEMGLKDVVTWTSMITGYSQNECASSALVLFPEMIRDGSRPNEFTLSSLVKCSGFLGSCVDGKQIHGCCWKYGFQTNVYVGSSLVDMYARCGYLREAQLVFNELESKNEVSWNALISGYARKGQGEEALALFVTMQREDYGATDFTYSALLCSSSSTGSLEQGKWLHAHMMKSGRKLVGYVGNTLLHMYAKSGNIWDAKKVFDRLVKVDVVSCNSMLIGYAQHGFGKEAVDLFEEMLLWVGIEPNDITFLSVLTACSHAGLLDEGKHYFELMKKYGIEPKVSHYTTVVDLLGRAGLLDQARSFIEEMPIEPTATIWGALLGASRMHKNMEIGAYAAEKVLELDPFYSGTHTLLSNIYASAGRWKDVAKVRKMMKDSGLKKEPACSWVEIENAVHVFVANDIAHPQKDKVHEMWEKLNQKIKEIGYVPDTSHVLLYVDQQEKELNLQYHSEKLALAFALLNTSQGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGLCSCRDYW 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03039 669 TIGRFAM PPR: pentatricopeptide repeat domain 400 432 IPR002885 -
Car04g03039 669 TIGRFAM PPR: pentatricopeptide repeat domain 162 196 IPR002885 -
Car04g03039 669 TIGRFAM PPR: pentatricopeptide repeat domain 263 292 IPR002885 -
Car04g03039 669 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Car04g03039 669 Pfam PPR repeat 134 157 IPR002885 -
Car04g03039 669 Pfam PPR repeat 436 460 IPR002885 -
Car04g03039 669 Pfam PPR repeat 336 360 IPR002885 -
Car04g03039 669 Pfam E motif 479 541 IPR046848 -
Car04g03039 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Car04g03039 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 65 647 - -
Car04g03039 669 Gene3D Tetratricopeptide repeat domain 334 570 IPR011990 GO:0005515
Car04g03039 669 Gene3D Tetratricopeptide repeat domain 77 217 IPR011990 GO:0005515
Car04g03039 669 PANTHER BNACNNG64210D PROTEIN 65 647 - -
Car04g03039 669 Gene3D Tetratricopeptide repeat domain 218 317 IPR011990 GO:0005515
Car04g03039 669 Pfam PPR repeat family 159 204 IPR002885 -
Car04g03039 669 Pfam PPR repeat family 362 410 IPR002885 -
Car04g03039 669 Pfam PPR repeat family 260 304 IPR002885 -
Car04g03039 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 397 IPR002885 -
Car04g03039 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Car04g03039 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Car04g03039 669 Pfam DYW family of nucleic acid deaminases 577 669 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03039 Car-Chr4 58301880 58304742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03039 83 669 Glycoside Hydrolase AT3G49170 40.369 4.58e-156 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03039 - - vun:114177575 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03039 04 58301880 58304742 Car04g03039 04 58301880 58304742 ECH