Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03024 aTGCTTCCCCGTTTCTCTCACCTTCTCCGCCACTCTCCCACCCATTCCATCATGTCACGTGCCATCACCTGCATCCCTCACTCCCACTTCTATTCCCTATCCACCAGTAACTACACCGCCGCCCTCCATTTCCGCGGCAACTCTCCTCGCCGTATCTCTTCTGCTCTTTTCGATCGTACCGTCAACAACCACCACCCGCAACTGTTTCAAGGAGTCCGTGCGTCCGCTGGCGGACACAGAGAATATCGGAAAGTCAGAAGGAGAACACCTAGGAGCAAGCAGAAGGAGTTAGAACTCTCCGTCGACATTTGCATCGAAGAAGATTTGCCTGATGATCCTGAAATTTTGAGTATTGCAGAGATGCTTCGCTTAAATGTTCCAATGGCAATGAAACTGGCATTTGATGGTTTAAAAGGTTCAGTGTATAAAACAAGAGACGCTGCTATAGATGATGTTGGTGGGTTTGATAGTGTTGAGTTATCGGTGCTTCTTTGCAATGATGAGTTTATACGAAAACTTAACAAGGAATGGAGAGATGAAGATCATGCTACCGATGTTCTCTCAATGTCACAACATGTACCTGGACTCAACCTTCCTATTCTTATGTTGGGTGATATTGTCATTTCTCTTGAGACAGCAGCAAGGCAAGCCGAGGAAAGAGGCCACACTCTTCTTGATGAGATTCGTATCCTCATGGTCCATGGTTTGTTACATCTTTTGGGATTTGATCATGAAATAAGCGAAGAGGCTGAAGTAGAAATGGAGAAAGAGGAGGAACTCCTTTTGAAGAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGCTATTGCTGACACAAATTCAAATTATCACCAAACCAGTTCGGATGACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGACATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTGCTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGAAAGGGGTGTGAAAATTGTGATAGCCACCGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGATGGTGGATTTAGCCGGAAAAGATGGCATTGTTTCAGAGTTCTCTCCTGGGGTTTTCTTGCAGGGATTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGCAACTTAGATCCAAATGTGTGTAGAGAGGCATGTCTTTATTCTTTGGAGAGTAAGATTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTAACCCTTTTTCATGATCCACTTGTTGATTCACTTCATACAATATACCATGAACCGAAGGCTGAGATCATGCCATCCGTTGAACATCTTCTGGCTTCTGCAGACATTCAGAAAATGATTTTCTTAGACACTGCCCAGAGTGTGGCTGATACATTACGGCCATACTGGTCAGATGCAACAAAAGGTCGGGCCACTGTTGTTCAAGCTGTGCCAGACATGCTGGAGATCGTACCCTTGGGAACATCTAAAGGGAGTGGAGTAAAAGTTTTGCTTGATCATTTGGGGGTTACTACTAAGGAGATAATGGCTATTGGTGACGGGGAAAATGATGTAGAGATGCTTGAGATGGCTTCTTTAGGCATAGCACTCAGTAATGGATCAGAGAAGACCAAAGCTGTGGCTAACGTAATTGGTTTAAGCAACGACGAAGATGGTGTAGCCGACGCCATCTATCGGTATGCATTCTGA 1743 0.4423 MLPRFSHLLRHSPTHSIMSRAITCIPHSHFYSLSTSNYTAALHFRGNSPRRISSALFDRTVNNHHPQLFQGVRASAGGHREYRKVRRRTPRSKQKELELSVDICIEEDLPDDPEILSIAEMLRLNVPMAMKLAFDGLKGSVYKTRDAAIDDVGGFDSVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPGLNLPILMLGDIVISLETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLGWKGKGLIKSAYDAIADTNSNYHQTSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISASTAKALREASERGVKIVIATGKARPAVIDIFKMVDLAGKDGIVSEFSPGVFLQGLLVYGRQGREIYRSNLDPNVCREACLYSLESKIPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEIMPSVEHLLASADIQKMIFLDTAQSVADTLRPYWSDATKGRATVVQAVPDMLEIVPLGTSKGSGVKVLLDHLGVTTKEIMAIGDGENDVEMLEMASLGIALSNGSEKTKAVANVIGLSNDEDGVADAIYRYAF 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03024 580 Gene3D Metalloproteases ("zincins"), catalytic domain 135 267 IPR023091 GO:0004222
Car04g03024 580 Gene3D - 397 504 - -
Car04g03024 580 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 35 580 - -
Car04g03024 580 Gene3D - 311 575 IPR023214 -
Car04g03024 580 ProSitePatterns Hypothetical cof family signature 1. 310 321 - -
Car04g03024 580 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 152 270 - -
Car04g03024 580 SUPERFAMILY HAD-like 304 578 IPR036412 -
Car04g03024 580 Pfam Endoribonuclease YbeY 154 264 IPR002036 GO:0004222|GO:0006364
Car04g03024 580 CDD HAD_Pase 311 577 - -
Car04g03024 580 Pfam haloacid dehalogenase-like hydrolase 311 575 - -
Car04g03024 580 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 35 580 IPR002036 GO:0004222|GO:0006364
Car04g03024 580 ProSitePatterns Hypothetical cof family signature 2. 529 551 - -
Car04g03024 580 Hamap Endoribonuclease YbeY [ybeY]. 100 269 IPR002036 GO:0004222|GO:0006364
Car04g03024 580 SFLD C2.B: Phosphomannomutase and Phosphatase Like 311 579 - -
Car04g03024 580 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 310 547 IPR006379 -
Car04g03024 580 SFLD Haloacid Dehalogenase 311 579 - -
Car04g03024 580 TIGRFAM Cof-subfamily: Cof-like hydrolase 310 575 IPR000150 GO:0016787
Car04g03024 580 ProSitePatterns Uncharacterized protein family UPF0054 signature. 234 244 IPR020549 -
Car04g03024 580 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 159 265 IPR002036 GO:0004222|GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03024 Car-Chr4 58124638 58131395 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03024 - - gmx:100810101 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03024 04 58124638 58131395 Car04g03024 04 58124638 58131395 ECH