LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g03020	ATGGAAGAAAACGACAGAAGAATCCTCGAGAGGGAGATGTATCAAATCGAGCAGATTCGCCAGCTCGATCTCGAGGAATTGCAGGTCGAAGAGGTTGACGATTTCCAAAATTCTTCCGACGACGACGATAACAACAACCACCGTGATCCTACTCATGGCTATGACAGCACAGGCATCCTGGGTGAATTCACTTACAATATTTGCGTAGCATCCTTACATTCATATCTGGGTGATGTTGAAGACACACACCACAGGACAGCTTTCTTGGATGGTGGGGCTGTATTGAACCTTCCACTTTTCTGTCTTCAAGGAGTTGTACTCTTTCCTGGGGCTACTCTTCCCCTGAGAGTTATTGAATCCAATTTTGTGGCTGCTGTTGAGAGATCTTTGAGTCGAGTTGACGTTCCTTACACCATTGGTGTGATTCGAGTTTACAGTGATACTGCAAATCATAGCATGAAATCCGCAAGCATTGGGACAACTGCAGAGATTCGGCAATATGGGCGCCTAGAGGATGGTTCCCTGAATGTGGTTACTCGTGGACAGCAGCGATTTCGCTTAAGACGGTGTTGGATCGACGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAGGACATACCATCGCGAACTCCAAGAGATGCTTTTGGAAAATTAACACCTCTAAGTAATCTGCCTCGTAACCGTGCCACCTCAAGCATGTTGCCGTTGAAGTATTCTGTTGAAGTACGTGGTTCCAAAAATGAGGAGAGTGATTCAGAAGAGAACTTTGAGAGGGAACTTTCATCAGCAGAGAGGAGAATCCATCAATCGCTCATTGGTTCCAGTTATGAACACGACTTAATTGATGAATCGGCAAGCAGCAGTGATGATAGATTCACATACGAGTCAGATCAGGAACTTAGATCCAGTCTAAATGACCCAGACACTTCAATATCATTGCTACCTGATCATGAAAACGATGCGGAAAATCTAGATTCTAGAATTGGGAACTGTTCCTCTTCTGGAAAACAGTCCTCCACAAGAGGACTTAATTGGTGTTCTAAAAATATAGACCCCTACCCCTCACGTAGAATTTCAAGAGCATTCATGCCTGGTTGGGTGTATTGTATGTTTGACTCCTATTGGCTTGCACAACGGGCTGCAGATATGTGGAAGCAAATCGTTGGTGCACCAAGCATGGATTCTCTTGTTAAGAAGCCTGATGTTTTATCATTTTCTATTGCCAGTAAAATACCTGTTTCTGAATCTACAAAGCAGGAGCTTTTGGATATTGATAGGATCCCATATAGACTGCGAAGGGAAATTGAACTACTAGAAAGCATTGATCTAATTCGATGTAAAATCTGCCAGATTATAATCGCAAAGCGAAGTGATATGCTGGTGATGTCTAGTGAGGGTCCTGTTGGTGCATATGTAAATGCAACTGGTTACGTGCATGAAGTAACGACTTTGTACAAGGCAAATGGGTTAGCTCTAACTGGGCCAGCATTTACAAAATACAGTTGGTTTCCGGGGTATGCATGGACAATTGCTAACTGTGCCACTTGTGAAACCCATATGGGGTGGCTTTTTACATCCACAAACAGAAAAGTGAAACCTAAGTCATTTTGGGGTATACGTAACTGTCAAGTTGCAGATGAAATGCGCTAA	1659	0.4346	MEENDRRILEREMYQIEQIRQLDLEELQVEEVDDFQNSSDDDDNNNHRDPTHGYDSTGILGEFTYNICVASLHSYLGDVEDTHHRTAFLDGGAVLNLPLFCLQGVVLFPGATLPLRVIESNFVAAVERSLSRVDVPYTIGVIRVYSDTANHSMKSASIGTTAEIRQYGRLEDGSLNVVTRGQQRFRLRRCWIDVEGVPYGEIQIIEEDIPSRTPRDAFGKLTPLSNLPRNRATSSMLPLKYSVEVRGSKNEESDSEENFERELSSAERRIHQSLIGSSYEHDLIDESASSSDDRFTYESDQELRSSLNDPDTSISLLPDHENDAENLDSRIGNCSSSGKQSSTRGLNWCSKNIDPYPSRRISRAFMPGWVYCMFDSYWLAQRAADMWKQIVGAPSMDSLVKKPDVLSFSIASKIPVSESTKQELLDIDRIPYRLRREIELLESIDLIRCKICQIIIAKRSDMLVMSSEGPVGAYVNATGYVHEVTTLYKANGLALTGPAFTKYSWFPGYAWTIANCATCETHMGWLFTSTNRKVKPKSFWGIRNCQVADEMR	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g03020	552	Pfam	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly	447	538	IPR004910	-
	Car04g03020	552	ProSiteProfiles	Lon N-terminal domain profile.	97	443	IPR003111	-
	Car04g03020	552	PANTHER	CEREBLON	6	546	-	-
	Car04g03020	552	SMART	lon_5	96	443	IPR003111	-
	Car04g03020	552	Gene3D	-	375	440	-	-
	Car04g03020	552	ProSiteProfiles	CULT domain profile.	444	551	IPR034750	-
	Car04g03020	552	MobiDBLite	consensus disorder prediction	290	320	-	-
	Car04g03020	552	Pfam	ATP-dependent protease La (LON) substrate-binding domain	96	442	IPR003111	-
	Car04g03020	552	Gene3D	-	77	205	IPR046336	-
	Car04g03020	552	MobiDBLite	consensus disorder prediction	33	53	-	-
	Car04g03020	552	Coils	Coil	249	269	-	-
	Car04g03020	552	MobiDBLite	consensus disorder prediction	301	315	-	-
	Car04g03020	552	CDD	CRBN_C_like	447	543	IPR034750	-
	Car04g03020	552	MobiDBLite	consensus disorder prediction	325	344	-	-
	Car04g03020	552	PANTHER	BNAA09G40760D PROTEIN	6	546	-	-
	Car04g03020	552	MobiDBLite	consensus disorder prediction	328	344	-	-
	Car04g03020	552	Gene3D	Peptide methionine sulfoxide reductase.	441	552	-	-
	Car04g03020	552	SUPERFAMILY	PUA domain-like	96	442	IPR015947	-
	Car04g03020	552	MobiDBLite	consensus disorder prediction	245	264	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g03020	Car-Chr4	58092590	58099033	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g03020	K11793		-	pop:7463779	658.292

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g03020	04	58092590	58099033	Car04g03020	04	58092590	58099033	ECH