Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02997 ATGGCGAAACCCTCACTCGATGAGGAAACAACCAAGAAAGTTATACGACAGGTCGAGTTTTACTTCAGCGATAGCAATCTTCCCAGGGATGATTTCTTGAGAAAAACGGTTACTGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGATTTGTTCCTTTAATAGGATGCGAAAGCATCTTAATTTGGGTGATGTTAAGGCCGATGACGTGAAGGAAGACACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCAGCTTCACTCAAGATCTCAGAAGATGGGAAAAAAGTTGGCAGGATTACTGAACTTCCCAAACCAGAAGAGGTAATTGAGCAGGTTGAGATCAGAACAATTGCTGCATCACCATTTGAATATAATGTGAAGCTTGAAGAAGTGGAGTCATTCTTTGGTCAACTTGCCAAGATCAACAGTGTTAGATTGCCACGTCATGTTGGAGACAAAAGATTCTTCTGTGGTACTGCTCTTATTGAGTTCTCATCAGATGAAGAAATGCAAAATGTTTTGAAGCAAAAATTGGTGTATGCGGGTGCTGAGCTAGAATTAAAGCCAAAGAAGGACTTTGATGCAGAAAGAGAAAAAGATTTAGAAAAGCATGAAAAATGTCGTAAATCTGTGGATGCAAGTCACGAGGATAACACAAATACAGAACCAAGCTACCCTAAAGGTTTACTTATAGCTTTCAAACTAAAGAGCAATTCAGCTGAAGTTCCTTCAGAAAAGAATAGCACTGATGAACAAGCCAATGGCACTAATGGTGTCACCAAGACAGATCAACAAAATCCCTCCGAAGTTGCTGCCGAGGAAAGTGATCAAAAGATGTCAGAAAATGACGATAATGATAATGATAAAGAAAACAATGGGGTGAATGAAGGAAAGGAAGCTGAAGTTGAAGAAAAGGTGCAGGAAAACAATGGTGTGAAAGAAATAAAGGAGACTGAAGCTGAAGAAAAGGACCAAGAAAACAACGGGGTGACTGAAGGTGAAGAAAAGAGCAAGGAATCTGAGGTAAAACGTTCAGCTGCTTCTTACAAGGACAACTCAGATGTTGTCTTACGTGAGGATTTGAAGGTTGTCTTTGAGAAGTTTGGTGATGTTAAGTACATAGATTTCGTTATGGGAGCTGAGTCAGGATTTATTCGGTTTGATGAACCTGAAGCCGCTCAGAAAGCACGTGCTGCTGCAGTTTTGTCTGAAAAGGGAGGCTTAGTTGTGAAGAATTATATTGCTGTTCTAGATCCAGTGACAGGTGAGGCTGAAAGAGAATACTGGAGCCTGCTCCGTGGTAATCAAGAAAAGCGCAGAGAAGACATGAATAACCGTGGAAGGGGAGGAAGGCATGGTGGTAGAGGAGGGAAACATTCGCGGCATAGAGATAATGATTTCGGAGGAGGTCGCCAAAATAAATTTAGAAAGTATTAA 1440 0.4076 MAKPSLDEETTKKVIRQVEFYFSDSNLPRDDFLRKTVTESEDGMVSLALICSFNRMRKHLNLGDVKADDVKEDTVKAVAEVLKNAASLKISEDGKKVGRITELPKPEEVIEQVEIRTIAASPFEYNVKLEEVESFFGQLAKINSVRLPRHVGDKRFFCGTALIEFSSDEEMQNVLKQKLVYAGAELELKPKKDFDAEREKDLEKHEKCRKSVDASHEDNTNTEPSYPKGLLIAFKLKSNSAEVPSEKNSTDEQANGTNGVTKTDQQNPSEVAAEESDQKMSENDDNDNDKENNGVNEGKEAEVEEKVQENNGVKEIKETEAEEKDQENNGVTEGEEKSKESEVKRSAASYKDNSDVVLREDLKVVFEKFGDVKYIDFVMGAESGFIRFDEPEAAQKARAAAVLSEKGGLVVKNYIAVLDPVTGEAEREYWSLLRGNQEKRREDMNNRGRGGRHGGRGGKHSRHRDNDFGGGRQNKFRKY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02997 479 Pfam La domain 14 84 IPR006630 -
Car04g02997 479 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car04g02997 479 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car04g02997 479 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car04g02997 479 MobiDBLite consensus disorder prediction 195 217 - -
Car04g02997 479 ProSiteProfiles xRRM domain profile. 336 460 IPR014886 GO:0003723
Car04g02997 479 MobiDBLite consensus disorder prediction 241 350 - -
Car04g02997 479 SMART rrm1_1 354 412 IPR000504 GO:0003723
Car04g02997 479 SMART rrm1_1 117 189 IPR000504 GO:0003723
Car04g02997 479 CDD LA_like_plant 10 99 - -
Car04g02997 479 Gene3D - 330 449 IPR012677 -
Car04g02997 479 SMART la 8 100 IPR006630 -
Car04g02997 479 MobiDBLite consensus disorder prediction 439 479 - -
Car04g02997 479 SUPERFAMILY RNA-binding domain, RBD 359 449 IPR035979 GO:0003676
Car04g02997 479 SUPERFAMILY "Winged helix" DNA-binding domain 7 106 IPR036390 -
Car04g02997 479 PANTHER LUPUS LA PROTEIN-RELATED 2 281 IPR045180 -
Car04g02997 479 PANTHER LUPUS LA PROTEIN-RELATED 326 478 IPR045180 -
Car04g02997 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Car04g02997 479 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Car04g02997 479 MobiDBLite consensus disorder prediction 241 274 - -
Car04g02997 479 PANTHER BNAANNG34180D PROTEIN 326 478 - -
Car04g02997 479 PANTHER BNAANNG34180D PROTEIN 2 281 - -
Car04g02997 479 Pfam RNA binding motif 355 449 IPR014886 GO:0003723
Car04g02997 479 MobiDBLite consensus disorder prediction 275 350 - -
Car04g02997 479 MobiDBLite consensus disorder prediction 195 226 - -
Car04g02997 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Car04g02997 479 Gene3D - 107 200 IPR012677 -
Car04g02997 479 MobiDBLite consensus disorder prediction 460 479 - -
Car04g02997 479 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Car04g02997 479 Gene3D - 6 106 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02997 Car-Chr4 57718408 57723104 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02997 K11090 - gmx:100803099 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02997 04 57718408 57723104 Car04g02997 04 57718408 57723104 ECH