Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02937 ATGGATGTTACTTCCTCCTCGTCGAGTCACGCCGAATTCGATTACTTATTCAAGCTTCTGTTAATTGGTGATTCTGGAGTCGGCAAAAGCACGCTGCTTCTCAGATTCACCTCTGATAATTTCGAGGATCTTTCTCCTACCATCGGTGTAGACTTCAAAGTGAAATATGTTACAATTGGTGGAAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAAGAAAGGTTTAGAACACTTACCAGTTCATATTATAGAGGTGCACAAGGAATAATTATGGTGTACGATGTAACACGGCGGGAAACTTTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGACTGTATCAAGATGCTTGTAGGAAACAAAGTTGACAAGGAAAGTGAAAGGGTTGTTAGCAAAAAGGAAGCGGTGGACTTTGCAAGGCAATATGGATGCCTTTATACTGAATGCAGTGCGAAAACCCGAGTAAATGTTGAGCAGTGTTTTGAAGAACTTGTAGTGAAGATTTTGGAGACACCAAGCCTCTTGGCTGAGGGCTCATCTGGTGTGAAAAAAAACATCTTCAAGCAGAAACCACAAGAGTCTGATGCATCAACTAGTAGCTGTTGCTCATGGTGA 645 0.4031 MDVTSSSSSHAEFDYLFKLLLIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVVKILETPSLLAEGSSGVKKNIFKQKPQESDASTSSCCSW 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02937 214 Pfam Ras family 18 179 IPR001806 GO:0003924|GO:0005525
Car04g02937 214 PANTHER BNAA05G18680D PROTEIN 8 213 - -
Car04g02937 214 ProSiteProfiles small GTPase Rho family profile. 10 179 - -
Car04g02937 214 SMART rab_sub_5 17 181 - -
Car04g02937 214 SMART arf_sub_2 1 182 - -
Car04g02937 214 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
Car04g02937 214 Gene3D - 10 212 IPR027417 -
Car04g02937 214 SMART ras_sub_4 14 181 - -
Car04g02937 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 185 IPR027417 -
Car04g02937 214 SMART ran_sub_2 22 214 - -
Car04g02937 214 PANTHER LD21953P-RELATED 8 213 - -
Car04g02937 214 CDD Rab18 17 178 - -
Car04g02937 214 TIGRFAM small_GTP: small GTP-binding protein domain 15 173 IPR005225 GO:0005525
Car04g02937 214 PRINTS Transforming protein P21 ras signature 17 38 - -
Car04g02937 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Car04g02937 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Car04g02937 214 PRINTS Transforming protein P21 ras signature 121 134 - -
Car04g02937 214 PRINTS Transforming protein P21 ras signature 156 178 - -
Car04g02937 214 ProSiteProfiles small GTPase Ras family profile. 7 214 IPR001806 GO:0003924|GO:0005525
Car04g02937 214 ProSiteProfiles small GTPase Rab1 family profile. 12 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02937 Car-Chr4 56546217 56553021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02937 18 171 EF-hand Containing Proteins AT5G27540 24.051 9.30e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02937 K07910 - gmx:100794330 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02937 04 56546217 56553021 Car04g02937 04 56546217 56553021 ECH