Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01904 ATGGCTTTTCAACTGATATTTATGTTTGCTATTTTATTCTTTATGGTTCCTTCAAGCAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAAGTCTATGAGTTTTTACAAAGGTTTTAGAAATCTTTGGGGTCCTCAACACCAAAGCCTTGATCAACATGCATTAACAATTTGGCTTGACAGAACCTCAGGAAGTGGATTCAAGTCGGTTCGTCCTTTTCGATCCGGATACTTTGGTGCTTCTATTAAGCTTCATCCTGGCTACACTGCAGGAGTTATAACAGCTTTTTATCTGTCTAACAATGAAGCACATCCAGGATTTCATGATGAAGTAGACATTGAGTTTCTAGGGACAACATTTGGAAAGCCTTATACTTTGCAAACAAATGTTTATATAAGAGGGAGTGGTGATGGGAAAATTATAGGCAGAGAAATGAAGTTCCATTTATGGTTTGATCCTACTAAAGATTTTCATCACTATGCTATACTTTGGAATCCTAAGGAAATAATATTCTTAGTGGATGATGTGCCAATAAGGAGGTACCCAAGGAAGAGTGATGCAACATTTCCACTAAGACCAATGTGGGTTTATGGTTCAATTTGGGATGCTTCATCATGGGCAACTGAAGATGGAAAATACAAAGCTGATTATAGATACCAACCTTTTGTTGCAAGGTACACCAATTTCAAGGCTAGTGGTTGCACAGCCTATGCACCACTTCGGTGCCACCCGGTCTCGGCCTCCCCGTATCGATCGGGTGGATTGACCCGACAACAACATTTCACTATGAGATGGGTTCAAAGTCATCACATGATTTATAATTATTGCCGAGACATTAAAAGAGACCATAGACTAACACCTGAGTGTTGGAGTTAA 891 0.4007 MAFQLIFMFAILFFMVPSSNAYWPPSPGYWPSSKFKSMSFYKGFRNLWGPQHQSLDQHALTIWLDRTSGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKDFHHYAILWNPKEIIFLVDDVPIRRYPRKSDATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCTAYAPLRCHPVSASPYRSGGLTRQQHFTMRWVQSHHMIYNYCRDIKRDHRLTPECWS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01904 296 PIRSF EndGlu_transf 2 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car04g01904 296 Gene3D - 20 294 - -
Car04g01904 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 282 IPR013320 -
Car04g01904 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 257 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car04g01904 296 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
Car04g01904 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 11 231 IPR000757 GO:0004553|GO:0005975
Car04g01904 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 295 - -
Car04g01904 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 295 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01904 Car-Chr4 20879391 20881873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01904 1 294 Glycoside Hydrolase AT3G44990 64.966 1.15e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01904 K08235 - gmx:100796698 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01904 04 20879391 20881873 Car04g01904 04 20879391 20881873 ECH
Car03g02513 03 71043111 71045711 Car04g01904 04 20879391 20881873 PCT