Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01902 ATGGATACCTTCCTCTTCACCTCAGAATCTGTAAACGAAGGTCACCCTGACAAGATCTGTGACCAGGTCTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATCCAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACCAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAAGTGAACTATGAGAAAATAGTTCGTGACACTTGCAGGGGTATTGGCTTTGTTTCTGATGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTTGTCAACATTGAACAGCAGAGCCCCGATATTGCTCAAGGAGTTCATGGTCACTTGTCCAAAAAACCTGAGGATATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGATGAAACACCTGAGCTAATGCCACTCACACATGTGCTTGCTACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAACAATACATGTCCATGGGTTAGGCCTGATGGTAAAACCCAAGTGACTGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGTGTGCACACAATCCTCATCTCAACTCAACACGACGAAACTGTCACCAATGACCAGATTGCTAAAGATTTGAAAGAGCATGTAATAAAGCCTGTTGTCCCAGCTGAATACCTCGACGACAACACCATCTTTCACCTTAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCAGGACTCACCGGCAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCTTTCTCAGGAAAGGATCCCACCAAGGTGGATAGGAGTGGTGCATACATTGTTAGGCAAGCAGCAAAAAGTGTGGTTGCTTCTGGTCTTGCCCGTCGTTGTATCGTGCAGGTTTCTTATGCAATTGGAGTTCCAGAGCCACTTTCTGTGTTTGTTGACACCTACAAAACTGGAAAGATTCCTGATAAGGATATTTTGGTTTTGATTAAGGAGAGTTTTGACTTCAGGCCTGGAATGATTGCTATCAATCTTGACCTCACAAGAGGTGGCAATTTCAGGTACCAGAAGACTGCTGCTTATGGGCATTTTGGACGAGATGATCCCGATTTTACATGGGAGACTGTGAAGATACTCAAGCCCAAGGCTTGA 1173 0.4501 MDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFVSDDVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEDIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNNTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNDQIAKDLKEHVIKPVVPAEYLDDNTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKESFDFRPGMIAINLDLTRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPKA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01902 390 CDD S-AdoMet_synt 5 384 - -
Car04g01902 390 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Car04g01902 390 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Car04g01902 390 TIGRFAM metK: methionine adenosyltransferase 5 387 IPR002133 GO:0004478|GO:0005524|GO:0006556
Car04g01902 390 PIRSF MAT 1 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Car04g01902 390 Gene3D - 117 381 - -
Car04g01902 390 SUPERFAMILY S-adenosylmethionine synthetase 240 386 IPR022636 GO:0004478|GO:0006556
Car04g01902 390 Hamap S-adenosylmethionine synthase [metK]. 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Car04g01902 390 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Car04g01902 390 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Car04g01902 390 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Car04g01902 390 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 390 - -
Car04g01902 390 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Car04g01902 390 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Car04g01902 390 Gene3D - 4 242 - -
Car04g01902 390 Gene3D - 11 279 - -
Car04g01902 390 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01902 Car-Chr4 20845468 20849364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01902 K00789 - gmx:100805448 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01902 04 20845468 20849364 Car04g01902 04 20845468 20849364 ECH
Car04g01902 04 20845468 20849364 Car03g02509 03 71010455 71013251 PCT