Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01470 ATGCCAAACTTCGTATTTCTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCTAACGATAATAATTTATCTCTCCACATTTTACAACAATTTCGTTGTACAATCCCTCACCTCATCCTCTGACATTGAAGCCCTCAAAGCTTTCAAAGCCTCAATCAAACCATCTTCCATCACACCTTACTCATGCTTAGCATCATGGAACTTCACCATTGATCCTTGCTCAGTTCCTCATCGCACTTACTTCATCTGCGGGTTCACCTGCACCCTCGACTCCAAAAACATCAATCAAATCACCCTCGACCCTGCAGGCTACTCAGGAACACTCACACCACTCATCTCTCAACTCACACAACTCGTCACACTAGACCTCTCAGACAACAATTTCTTTGGTTCAATCCCTTTTTCACTCTCTTCTCTTTCCAATCTCAAAACCTTAACACTCCGATCCAATTCCTTCTCAGGTTCAATCCCTTCTTCTATAACAACACTCAAATCACTCGAATCTATTGATTTTTCACACAATTCTCTAACTGGGTCTCTTCCAAACTCCTTGAATTCTCTTTCAAGCCTTCGTAGAATCGATTTGAGTTTCAACAAATTCATTGGTTCGATCCCAATACTACCACCCAACTTGATAGAACTTGCAATCAAGGCCAATTCTTTATCTGGGTCTCTTCAAAAAACAACCTTTTTGGGATCGAAGCAATTGGAAGTGGTGGAGCTAAGCGAGAATGTACTCAACGGAATGATTGAAGATTGGTTCTTGCTTTTGCCATCGCTGCAGCAAGTGAATTTGGAAAATAATAGTTTCACGGGGATTCAGATCTCGAGACCTGTGAAAGATGGAGGAAACAATCTTGTGGCATTGAACATCGGATTTAACAAAATACAAGGTTACGCGCCCGTGAATCTCGCTGCATATCCAATGCTGTCGTTTTTGTCGATGAGTCATAATTCGCTACGTGGCACTATACCATTGGAGTATGGGAAGATAAAGAGTATCAAGAAGTTGTTTTTGGATGGAAACTTCTTCGTTGGGAAGCCGCCGACGGGATTGTTATCTGCCGGCGGTGGTGTTTCCGGCAGCTTGGGGGACAATTGTCTAGAGGGATGTCCAACTTCTTCGCAGTTGTGCAAACCGGCACAGAAACCCATTTCCGTTTGCAAACGAGTCTATCTTGGAAAATCGTATTAA 1209 0.4144 MPNFVFLSXXXXXXXXXXXXXSLTIIIYLSTFYNNFVVQSLTSSSDIEALKAFKASIKPSSITPYSCLASWNFTIDPCSVPHRTYFICGFTCTLDSKNINQITLDPAGYSGTLTPLISQLTQLVTLDLSDNNFFGSIPFSLSSLSNLKTLTLRSNSFSGSIPSSITTLKSLESIDFSHNSLTGSLPNSLNSLSSLRRIDLSFNKFIGSIPILPPNLIELAIKANSLSGSLQKTTFLGSKQLEVVELSENVLNGMIEDWFLLLPSLQQVNLENNSFTGIQISRPVKDGGNNLVALNIGFNKIQGYAPVNLAAYPMLSFLSMSHNSLRGTIPLEYGKIKSIKKLFLDGNFFVGKPPTGLLSAGGGVSGSLGDNCLEGCPTSSQLCKPAQKPISVCKRVYLGKSY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01470 402 SUPERFAMILY L domain-like 46 354 - -
Car04g01470 402 SMART LRR_typ_2 262 283 IPR003591 -
Car04g01470 402 SMART LRR_typ_2 192 219 IPR003591 -
Car04g01470 402 SMART LRR_typ_2 168 191 IPR003591 -
Car04g01470 402 SMART LRR_typ_2 120 144 IPR003591 -
Car04g01470 402 Pfam Leucine rich repeat 145 205 IPR001611 GO:0005515
Car04g01470 402 Pfam Leucine rich repeat 214 274 IPR001611 GO:0005515
Car04g01470 402 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 31 401 - -
Car04g01470 402 Gene3D Ribonuclease Inhibitor 212 385 IPR032675 -
Car04g01470 402 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 31 401 - -
Car04g01470 402 Gene3D Ribonuclease Inhibitor 43 211 IPR032675 -
Car04g01470 402 Pfam Leucine rich repeat N-terminal domain 44 79 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01470 Car-Chr4 14914400 14915751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01470 48 398 Receptor kinase-like Gene Family AT3G05360 30.933 1.83e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01470 - - gmx:100780948 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01470 04 14914400 14915751 Car04g01470 04 14914400 14915751 ECH