Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01421 ATGGACATGTTCGTGAATGCAGACAATCCTATGCATCAGATGTCTGAAAAAGTTACCGAGGAAAGCATTTCATCTGCTAAAAGTTATTTGAATCATAGTGGGATGGGTAGGGTATCTTGCACGGAGAATAATGGCTCTTCAAGACACAGCATGAGTGTTAGTATGTATCAAGGAGGTAGGGGAATGGGAAGGCCCAGAAAAGCTCCACCGGATTTGCCTTCTTTGCTTTTGGATGCTCGGATATGTTATCTGGGTATGCCGATTGTACCAGCTGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCCCTTTATTTATATATTAATTCGTCTGGGACTCAGAATGAGAAGAATGAGACTGTGGGATCAGAAACTGATGCTTATTCCATCGCTGATATGCTTTATTATGTCAAATCAGATGTCTATACCGTGAATTTGGCCATGGCATATGGCCAAGCAGCAATGCTTTTGGCTGCTGGAAAAAAAGGTTATCGTGCTGTACTGCCACATTCATCCACAAAAGTATTTCTCCCAAAAGTCCACAGATCAAGTGGTTCTGTTGTAGATATGTGGATTAAGGCAAAAGAGCTCGAGGCAAATGCCGATTATTACATTGAGCTGGTGGCAAAAGGAACAGGGAAATCAAAGGAAGAAATAGCTAAAGATGTCCAGAGGACTAAATATTTCCAAGCACAGGAAGCCATAGACTACGGACTTGCTGACAAAATAATGGACTCAGGAGAAGCTGCATATGAAAAACGGaattataatGAAATGCGCGCTACAAGAGCACTCAGGAGACAATCTGGTGGGAGCCCTCAAGCGGCTCCTTCGGGACTTTAG 867 0.4279 MDMFVNADNPMHQMSEKVTEESISSAKSYLNHSGMGRVSCTENNGSSRHSMSVSMYQGGRGMGRPRKAPPDLPSLLLDARICYLGMPIVPAVTELILAQLMWLDYDNPAKPLYLYINSSGTQNEKNETVGSETDAYSIADMLYYVKSDVYTVNLAMAYGQAAMLLAAGKKGYRAVLPHSSTKVFLPKVHRSSGSVVDMWIKAKELEANADYYIELVAKGTGKSKEEIAKDVQRTKYFQAQEAIDYGLADKIMDSGEAAYEKRNYNEMRATRALRRQSGGSPQAAPSGL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01421 288 CDD S14_ClpP_2 71 251 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car04g01421 288 Gene3D - 45 258 - -
Car04g01421 288 SUPERFAMILY ClpP/crotonase 66 257 IPR029045 -
Car04g01421 288 PRINTS Clp protease catalytic subunit P signature 111 131 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car04g01421 288 PRINTS Clp protease catalytic subunit P signature 71 86 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car04g01421 288 PRINTS Clp protease catalytic subunit P signature 230 249 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car04g01421 288 PRINTS Clp protease catalytic subunit P signature 172 191 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car04g01421 288 PRINTS Clp protease catalytic subunit P signature 151 168 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car04g01421 288 Pfam Clp protease 73 254 IPR023562 -
Car04g01421 288 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 1 275 - -
Car04g01421 288 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 275 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01421 Car-Chr4 14472776 14475630 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01421 K01358 - gmx:100806258 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01421 04 14472776 14475630 Car04g01421 04 14472776 14475630 ECH