Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01401 ATGTTGCAAACCCTAGTAGTACCCTCGAGCCTACGCTTCGCGAATCGAATATTCCTCCGAAGATTCACCATTGTTCGTGCATTCTCTTCCTCCTCCAACTATGTAGATCAGTCACGTGGTGGCCTCCCTCGATTCTACTCCGAAACTCTTCCTGCTTCAAAGGGTAATGTTATTCGTGTAAAAGGTGATGAATTCTGGCACATGACAAAAGTGTTGAGGTTGTCAACCAATGATAGGGTACAGCTCTTCAATGGGAAAGGTGGTTTGGTAGAAGGATGCATACAGAACATTGACCGAACTGGACTTGATTTTGTTGCATCGACTGATCTGAAGTTAGTGCCTCCACAGAATTCACAATGGCATGTATTTGCTGGTTTTGGTACTCTGAAGGGTGGCCGTGCTGACTGGCTTGTAGAGAAGTGTACTGAACTTGGAGCCAGTAGTGTTACTCCTCTATTGACTGAACGTTCTGCATCAATCTCAGAAAATCGGGTGGACAGACTGGAACGTGTCATTTTGGCAGCATCTAAACAATGTCAACGACTGCATGAAATGATCCTAAAACCTCCTGTAGAGATTGGTGATCTTTTGCATCTTATTGCGCAATCAAAGCTATCTCTTGTTGCAACAGCAGAAGCAACTCCTGTTCTTAATGCATTGACATCATTGGGAAAAGAATGTAGCGGCTTAATCATAGTCGGGCCAGAAGGCGATTTCACAGAGAAAGAAGTGAATATGATGATGGAAGCAGGTGCTAAAGCTGTTGGTCTAGGGCCTCATCGTCTTCGAGTTGAAACTGCCACGATAGCATTTCTGGCTACCGTCATGTTATGGTCTGACTCTCAACAAACTTCTGTCTCTTGA 864 0.4456 MLQTLVVPSSLRFANRIFLRRFTIVRAFSSSSNYVDQSRGGLPRFYSETLPASKGNVIRVKGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQNIDRTGLDFVASTDLKLVPPQNSQWHVFAGFGTLKGGRADWLVEKCTELGASSVTPLLTERSASISENRVDRLERVILAASKQCQRLHEMILKPPVEIGDLLHLIAQSKLSLVATAEATPVLNALTSLGKECSGLIIVGPEGDFTEKEVNMMMEAGAKAVGLGPHRLRVETATIAFLATVMLWSDSQQTSVS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01401 287 Pfam RNA methyltransferase PUA domain 61 104 IPR046887 -
Car04g01401 287 Pfam RNA methyltransferase domain 119 275 IPR046886 -
Car04g01401 287 SUPERFAMILY PUA domain-like 44 102 IPR015947 -
Car04g01401 287 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 55 276 IPR006700 GO:0006364|GO:0008168
Car04g01401 287 Gene3D - 41 286 IPR029026 -
Car04g01401 287 CDD RsmE-like 126 273 IPR046886 -
Car04g01401 287 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 42 284 IPR006700 GO:0006364|GO:0008168
Car04g01401 287 SUPERFAMILY alpha/beta knot 118 279 IPR029028 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01401 K09761 - gmx:100777253 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01401 04 14323690 14327080 Car04g01401 04 14323690 14327080 ECH