LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01362	ATGGATTCCGGGGCCTATTCTTCAGTTTCCATTATTATTTTCCTTGCAGCCATCATAGCTAGTGCTTATTATCATTCAGCAGAAGCAGCTATGTCTAAGGGATCTTTTGAAGATAATTTCAGCATAATGTGGTCTCAAGATCATTTTACTACCTCTGAAGATGGACAGATCTGGTATCTTTCTTTAGACAACGACACAGGATGTGGGTTTCAAACAAAACAAAGGTACAGATTTGGGTGGTTTAGTATGAAGCTGAAGTTGGTAGGAGGTGATTCTGCTGGTGTTGTAACAGCTTATTATATGTGCACAGAAAATGGTGCAGGACCAGAAAGAGATGAACTTGATTTTGAGTTTTTGGGAAACAGAACAGGGCAACCATATTTGATTCAGACAAATGTGTACAAGAATGGAACTGGTGGGCGTGAGATGAGACATATGCTATGGTTTGATCCAACTGAGGATTATCACACTTATTCCATCCTATGGAACAATCATCAGATAGTGTTTTTTGTGGATAGAGTTCCTATAAGGGTATTCAAGAACAATGAAAAACCAAACAATTTCTTCCCGAATGAGAAACCAATGTACTTGTTTTCAAGTGTATGGAATGCAGATGATTGGGCCACAAGAGGTGGACTTGAGAAAACAAATTGGAAATTAGCTCCATTTGTGTCATCTTACAAAGATTTCAGTGTTGATGCTTGTCAATGGAAAGATCCATATCCTACATGTGTTTCAACCACAACAAAAAGTTGGTGGGATCAATATGATGCTTGGCATCTATCAGGAGATCAAAAAATGGATTATGCTTGGGTTCAGAGAAACCTTGTGATTTATGATTATTGTAAGGATTCTGAACGTTATCCGATTCTGCCAGAAGAGTGCTCATTGAGTCCATGGGAATAA	906	0.3841	MDSGAYSSVSIIIFLAAIIASAYYHSAEAAMSKGSFEDNFSIMWSQDHFTTSEDGQIWYLSLDNDTGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPERDELDFEFLGNRTGQPYLIQTNVYKNGTGGREMRHMLWFDPTEDYHTYSILWNNHQIVFFVDRVPIRVFKNNEKPNNFFPNEKPMYLFSSVWNADDWATRGGLEKTNWKLAPFVSSYKDFSVDACQWKDPYPTCVSTTTKSWWDQYDAWHLSGDQKMDYAWVQRNLVIYDYCKDSERYPILPEECSLSPWE	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01362	301	PRINTS	Glycosyl hydrolase family 16 signature	68	86	IPR008264	GO:0004553\|GO:0005975
	Car04g01362	301	PRINTS	Glycosyl hydrolase family 16 signature	129	142	IPR008264	GO:0004553\|GO:0005975
	Car04g01362	301	PRINTS	Glycosyl hydrolase family 16 signature	147	164	IPR008264	GO:0004553\|GO:0005975
	Car04g01362	301	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	299	IPR013320	-
	Car04g01362	301	CDD	GH16_XET	32	295	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Car04g01362	301	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	227	IPR000757	GO:0004553\|GO:0005975
	Car04g01362	301	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	113	123	IPR008263	GO:0004553\|GO:0005975
	Car04g01362	301	Pfam	Glycosyl hydrolases family 16	37	219	IPR000757	GO:0004553\|GO:0005975
	Car04g01362	301	Gene3D	-	22	298	-	-
	Car04g01362	301	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	14	300	-	-
	Car04g01362	301	PIRSF	EndGlu_transf	2	300	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Car04g01362	301	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	248	295	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Car04g01362	301	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	14	300	IPR044791	GO:0004553

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01362	Car-Chr4	13911614	13913865	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01362	4	295	Glycoside Hydrolase	AT5G13870	50.342	7.81e-99	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g01362	K08235		-	gmx:100793766	572.778

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01362	04	13911614	13913865	Car04g01362	04	13911614	13913865	ECH