Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00710 ATGAATTTCAGCCGTTTGATTCCCGGCGGAGGAAGACTTCTCCGTCGACTATGCACAGAGGCTACGGTGGCTGAGTATCCGAAAAAGAAGCCAAACCTTTACAAAAGGCTGTCGGAGCTGGAAAAGACTGGAGAGAGCGTCTCGCAGACGTTGAATCAGTATATAATGGGAGGCAAAGCCGTAGGAAAATCAGAGCTCGAGAAATGCGTTCAGGAGCTTCGAAAGTATCGCAGATTCCAGCATGCATTCGAGATAATGGAATGGATGGTGATGAGGAAAATTAACTTTTCATGGAATAACTATGCAGTGCAATTAGATCTTGTGTCCAAAGTGAAAGGATTGATTGAAGCTGAGAATTACTTTAACAGTCTTAGTTCTCCTGCAAAGAACAAGTACACATACGGTTCTCTTTTAAACTGTTACTGCAAAGAACTAATGCTAGACAAGGCATTGGCTCATTTTAACACGATGGATGAATTGGGTTATCTCACGAGTTTGTCTTTCACCAATTTGATGACTTTATATATGAAACTAGGTCAACCCTTGAAAGTTCTTGATTTGGTTAATGATATGAAGCAGAGGAAAATTCCCATGACTGCATTTGCATATATTGTTTGGATGAACAGCTGCGCCGAATTGAATGACTTAGATGGGGTTGAAAGTGTCTATgaagagatgggaagagaagatgaagacaagaTTAATTGGACGACTTATAGCAACCTTGCTGCTATCTATGTAAAAGCTGGACATTTTGAGAAAGCTGAGTTGATGCTTAAGAAGCTGGAAGAAATAGTGAGGCCGCAGGAACGCGAAACTTACCATTGCTTGCTGTCCCTTTATGGTGGGACTGGTAATGTTAAAGAGGTTTATAGAGTGTGGAAGACCCTGAAGACGGTCTCACCGGTGACCAATAAGAGCTATCTTATCATGCTGTCTACCCTTCGAAGGCTTAATGATATGGAGGGTATAATAAAAATCTTTAAGGAGTGGGAATCTAGGCATGTTAGTTATGATACAAGGTTGGTTGGTGTTGCAGTGTTTGCTTACTTGAGTCAAAACATGGAAGAAGAAGCTGTGTTGATCTTTGAGGAAGCTCTCAAGAGGTGCAGAGGACCTTTCTATAGGATTCGAGAAATGTTCGTTGTGTCTTTATTGGAGAAACGTCAATTTGATGGTGCTATGACCCACTTAGAGACAGCACTTTCAGATGTCGCGGATGGTGAATACTGCCCTTCACCCCAAGTTGTGAGTGCTTTACTAAAGTATTATAAAGAAGAAACGGATCTTGATGGTGTTGAGGAGTTATGCAAGATTCTCAGGAGTCACAATTTTGATGAATCGAGAATTAAAACTTGCATTGCTGCATCGGAATCTTCTCCTGAAACTCATTCGGCATCAAAGGAAGATCCGGATGCCGCCGACCATGTCCATGAGAACTTGTAA 1446 0.408 MNFSRLIPGGGRLLRRLCTEATVAEYPKKKPNLYKRLSELEKTGESVSQTLNQYIMGGKAVGKSELEKCVQELRKYRRFQHAFEIMEWMVMRKINFSWNNYAVQLDLVSKVKGLIEAENYFNSLSSPAKNKYTYGSLLNCYCKELMLDKALAHFNTMDELGYLTSLSFTNLMTLYMKLGQPLKVLDLVNDMKQRKIPMTAFAYIVWMNSCAELNDLDGVESVYEEMGREDEDKINWTTYSNLAAIYVKAGHFEKAELMLKKLEEIVRPQERETYHCLLSLYGGTGNVKEVYRVWKTLKTVSPVTNKSYLIMLSTLRRLNDMEGIIKIFKEWESRHVSYDTRLVGVAVFAYLSQNMEEEAVLIFEEALKRCRGPFYRIREMFVVSLLEKRQFDGAMTHLETALSDVADGEYCPSPQVVSALLKYYKEETDLDGVEELCKILRSHNFDESRIKTCIAASESSPETHSASKEDPDAADHVHENL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00710 481 PANTHER OS12G0527900 PROTEIN 3 471 - -
Car04g00710 481 PANTHER OS01G0301500 PROTEIN 3 471 - -
Car04g00710 481 Pfam PPR repeat 167 195 IPR002885 -
Car04g00710 481 Pfam PPR repeat 132 161 IPR002885 -
Car04g00710 481 Pfam PPR repeat 202 229 IPR002885 -
Car04g00710 481 Pfam PPR repeat 238 264 IPR002885 -
Car04g00710 481 MobiDBLite consensus disorder prediction 463 481 - -
Car04g00710 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Car04g00710 481 Gene3D Tetratricopeptide repeat domain 274 479 IPR011990 GO:0005515
Car04g00710 481 MobiDBLite consensus disorder prediction 456 481 - -
Car04g00710 481 Gene3D Tetratricopeptide repeat domain 32 163 IPR011990 GO:0005515
Car04g00710 481 Gene3D Tetratricopeptide repeat domain 164 273 IPR011990 GO:0005515
Car04g00710 481 SUPERFAMILY TPR-like 129 330 IPR011990 GO:0005515
Car04g00710 481 TIGRFAM PPR: pentatricopeptide repeat domain 167 199 IPR002885 -
Car04g00710 481 TIGRFAM PPR: pentatricopeptide repeat domain 132 161 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00710 Car-Chr4 6981111 6983403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00710 33 441 EF-hand Containing Proteins AT1G02150 37.046 2.81e-83 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00710 - - gmx:100781679 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00710 04 6981111 6983403 Car04g00710 04 6981111 6983403 ECH
Car04g00710 04 6981111 6983403 Car03g02635 03 72141740 72143058 PCT